pypsa-eur/scripts/_helpers.py

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# -*- coding: utf-8 -*-
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# SPDX-FileCopyrightText: : 2017-2023 The PyPSA-Eur Authors
#
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# SPDX-License-Identifier: MIT
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
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from pathlib import Path
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import pandas as pd
REGION_COLS = ["geometry", "name", "x", "y", "country"]
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Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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def configure_logging(snakemake, skip_handlers=False):
"""
Configure the basic behaviour for the logging module.
Note: Must only be called once from the __main__ section of a script.
The setup includes printing log messages to STDERR and to a log file defined
by either (in priority order): snakemake.log.python, snakemake.log[0] or "logs/{rulename}.log".
Additional keywords from logging.basicConfig are accepted via the snakemake configuration
file under snakemake.config.logging.
Parameters
----------
snakemake : snakemake object
Your snakemake object containing a snakemake.config and snakemake.log.
skip_handlers : True | False (default)
Do (not) skip the default handlers created for redirecting output to STDERR and file.
"""
import logging
kwargs = snakemake.config.get("logging", dict()).copy()
Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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kwargs.setdefault("level", "INFO")
if skip_handlers is False:
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
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fallback_path = Path(__file__).parent.joinpath(
"..", "logs", f"{snakemake.rule}.log"
)
logfile = snakemake.log.get(
"python", snakemake.log[0] if snakemake.log else fallback_path
)
Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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kwargs.update(
{
"handlers": [
# Prefer the 'python' log, otherwise take the first log for each
# Snakemake rule
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
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logging.FileHandler(logfile),
Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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logging.StreamHandler(),
]
}
)
logging.basicConfig(**kwargs)
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def load_network(import_name=None, custom_components=None):
"""
Helper for importing a pypsa.Network with additional custom components.
Parameters
----------
import_name : str
As in pypsa.Network(import_name)
custom_components : dict
Dictionary listing custom components.
For using ``snakemake.config['override_components']``
in ``config.yaml`` define:
.. code:: yaml
override_components:
ShadowPrice:
component: ["shadow_prices","Shadow price for a global constraint.",np.nan]
attributes:
name: ["string","n/a","n/a","Unique name","Input (required)"]
value: ["float","n/a",0.,"shadow value","Output"]
Returns
-------
pypsa.Network
"""
import pypsa
from pypsa.descriptors import Dict
override_components = None
override_component_attrs = None
if custom_components is not None:
override_components = pypsa.components.components.copy()
override_component_attrs = Dict(
{k: v.copy() for k, v in pypsa.components.component_attrs.items()}
)
for k, v in custom_components.items():
override_components.loc[k] = v["component"]
override_component_attrs[k] = pd.DataFrame(
columns=["type", "unit", "default", "description", "status"]
)
for attr, val in v["attributes"].items():
override_component_attrs[k].loc[attr] = val
return pypsa.Network(
import_name=import_name,
override_components=override_components,
override_component_attrs=override_component_attrs,
)
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def pdbcast(v, h):
return pd.DataFrame(
v.values.reshape((-1, 1)) * h.values, index=v.index, columns=h.index
)
def load_network_for_plots(fn, tech_costs, config, combine_hydro_ps=True):
Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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import pypsa
from add_electricity import load_costs, update_transmission_costs
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n = pypsa.Network(fn)
n.loads["carrier"] = n.loads.bus.map(n.buses.carrier) + " load"
n.stores["carrier"] = n.stores.bus.map(n.buses.carrier)
n.links["carrier"] = (
n.links.bus0.map(n.buses.carrier) + "-" + n.links.bus1.map(n.buses.carrier)
)
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n.lines["carrier"] = "AC line"
n.transformers["carrier"] = "AC transformer"
n.lines["s_nom"] = n.lines["s_nom_min"]
n.links["p_nom"] = n.links["p_nom_min"]
if combine_hydro_ps:
n.storage_units.loc[
n.storage_units.carrier.isin({"PHS", "hydro"}), "carrier"
] = "hydro+PHS"
# if the carrier was not set on the heat storage units
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# bus_carrier = n.storage_units.bus.map(n.buses.carrier)
# n.storage_units.loc[bus_carrier == "heat","carrier"] = "water tanks"
Nyears = n.snapshot_weightings.objective.sum() / 8760.0
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costs = load_costs(tech_costs, config["costs"], config["electricity"], Nyears)
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update_transmission_costs(n, costs)
return n
def update_p_nom_max(n):
# if extendable carriers (solar/onwind/...) have capacity >= 0,
# e.g. existing assets from the OPSD project are included to the network,
# the installed capacity might exceed the expansion limit.
# Hence, we update the assumptions.
n.generators.p_nom_max = n.generators[["p_nom_min", "p_nom_max"]].max(1)
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def aggregate_p_nom(n):
return pd.concat(
[
n.generators.groupby("carrier").p_nom_opt.sum(),
n.storage_units.groupby("carrier").p_nom_opt.sum(),
n.links.groupby("carrier").p_nom_opt.sum(),
n.loads_t.p.groupby(n.loads.carrier, axis=1).sum().mean(),
]
)
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def aggregate_p(n):
return pd.concat(
[
n.generators_t.p.sum().groupby(n.generators.carrier).sum(),
n.storage_units_t.p.sum().groupby(n.storage_units.carrier).sum(),
n.stores_t.p.sum().groupby(n.stores.carrier).sum(),
-n.loads_t.p.sum().groupby(n.loads.carrier).sum(),
]
)
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def aggregate_e_nom(n):
return pd.concat(
[
(n.storage_units["p_nom_opt"] * n.storage_units["max_hours"])
.groupby(n.storage_units["carrier"])
.sum(),
n.stores["e_nom_opt"].groupby(n.stores.carrier).sum(),
]
)
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def aggregate_p_curtailed(n):
return pd.concat(
[
(
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(
n.generators_t.p_max_pu.sum().multiply(n.generators.p_nom_opt)
- n.generators_t.p.sum()
)
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.groupby(n.generators.carrier)
.sum()
),
(
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(n.storage_units_t.inflow.sum() - n.storage_units_t.p.sum())
.groupby(n.storage_units.carrier)
.sum()
),
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]
)
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
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def aggregate_costs(n, flatten=False, opts=None, existing_only=False):
components = dict(
Link=("p_nom", "p0"),
Generator=("p_nom", "p"),
StorageUnit=("p_nom", "p"),
Store=("e_nom", "p"),
Line=("s_nom", None),
Transformer=("s_nom", None),
)
costs = {}
for c, (p_nom, p_attr) in zip(
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n.iterate_components(components.keys(), skip_empty=False), components.values()
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):
if c.df.empty:
continue
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if not existing_only:
p_nom += "_opt"
costs[(c.list_name, "capital")] = (
(c.df[p_nom] * c.df.capital_cost).groupby(c.df.carrier).sum()
)
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if p_attr is not None:
p = c.pnl[p_attr].sum()
if c.name == "StorageUnit":
p = p.loc[p > 0]
costs[(c.list_name, "marginal")] = (
(p * c.df.marginal_cost).groupby(c.df.carrier).sum()
)
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costs = pd.concat(costs)
if flatten:
assert opts is not None
conv_techs = opts["conv_techs"]
costs = costs.reset_index(level=0, drop=True)
costs = costs["capital"].add(
costs["marginal"].rename({t: t + " marginal" for t in conv_techs}),
fill_value=0.0,
)
return costs
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def progress_retrieve(url, file):
Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
2019-11-28 07:22:52 +00:00
import urllib
Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
2019-11-28 07:22:52 +00:00
from progressbar import ProgressBar
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pbar = ProgressBar(0, 100)
def dlProgress(count, blockSize, totalSize):
pbar.update(int(count * blockSize * 100 / totalSize))
urllib.request.urlretrieve(url, file, reporthook=dlProgress)
def get_aggregation_strategies(aggregation_strategies):
# default aggregation strategies that cannot be defined in .yaml format must be specified within
# the function, otherwise (when defaults are passed in the function's definition) they get lost
# when custom values are specified in the config.
import numpy as np
from pypsa.networkclustering import _make_consense
bus_strategies = dict(country=_make_consense("Bus", "country"))
bus_strategies.update(aggregation_strategies.get("buses", {}))
generator_strategies = {"build_year": lambda x: 0, "lifetime": lambda x: np.inf}
generator_strategies.update(aggregation_strategies.get("generators", {}))
return bus_strategies, generator_strategies
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
2019-12-09 20:29:15 +00:00
def mock_snakemake(rulename, **wildcards):
"""
This function is expected to be executed from the 'scripts'-directory of '
the snakemake project. It returns a snakemake.script.Snakemake object,
based on the Snakefile.
If a rule has wildcards, you have to specify them in **wildcards.
Parameters
----------
rulename: str
name of the rule for which the snakemake object should be generated
**wildcards:
keyword arguments fixing the wildcards. Only necessary if wildcards are
needed.
"""
import os
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
2019-12-09 20:29:15 +00:00
import snakemake as sm
from packaging.version import Version, parse
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
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from pypsa.descriptors import Dict
from snakemake.script import Snakemake
script_dir = Path(__file__).parent.resolve()
assert (
Path.cwd().resolve() == script_dir
), f"mock_snakemake has to be run from the repository scripts directory {script_dir}"
os.chdir(script_dir.parent)
for p in sm.SNAKEFILE_CHOICES:
if os.path.exists(p):
snakefile = p
break
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kwargs = dict(rerun_triggers=[]) if parse(sm.__version__) > Version("7.7.0") else {}
workflow = sm.Workflow(snakefile, overwrite_configfiles=[], **kwargs)
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
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workflow.include(snakefile)
workflow.global_resources = {}
rule = workflow.get_rule(rulename)
dag = sm.dag.DAG(workflow, rules=[rule])
wc = Dict(wildcards)
job = sm.jobs.Job(rule, dag, wc)
def make_accessable(*ios):
for io in ios:
for i in range(len(io)):
io[i] = os.path.abspath(io[i])
make_accessable(job.input, job.output, job.log)
snakemake = Snakemake(
job.input,
job.output,
job.params,
job.wildcards,
job.threads,
job.resources,
job.log,
job.dag.workflow.config,
job.rule.name,
None,
)
# create log and output dir if not existent
for path in list(snakemake.log) + list(snakemake.output):
Path(path).parent.mkdir(parents=True, exist_ok=True)
os.chdir(script_dir)
return snakemake