pypsa-eur/scripts/build_cutout.py

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# -*- coding: utf-8 -*-
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# SPDX-FileCopyrightText: : 2017-2024 The PyPSA-Eur Authors
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#
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# SPDX-License-Identifier: MIT
"""
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Create cutouts with `atlite <https://atlite.readthedocs.io/en/latest/>`_.
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For this rule to work you must have
- installed the `Copernicus Climate Data Store <https://cds.climate.copernicus.eu>`_ ``cdsapi`` package (`install with `pip``) and
- registered and setup your CDS API key as described `on their website <https://cds.climate.copernicus.eu/api-how-to>`_.
.. seealso::
For details on the weather data read the `atlite documentation <https://atlite.readthedocs.io/en/latest/>`_.
If you need help specifically for creating cutouts `the corresponding section in the atlite documentation <https://atlite.readthedocs.io/en/latest/examples/create_cutout.html>`_ should be helpful.
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Relevant Settings
-----------------
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.. code:: yaml
atlite:
nprocesses:
cutouts:
{cutout}:
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
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.. seealso::
Documentation of the configuration file ``config/config.yaml`` at
:ref:`atlite_cf`
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Inputs
------
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*None*
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Outputs
-------
- ``cutouts/{cutout}``: weather data from either the `ERA5 <https://www.ecmwf.int/en/forecasts/datasets/reanalysis-datasets/era5>`_
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reanalysis weather dataset or `SARAH-3 <https://wui.cmsaf.eu/safira/action/viewProduktSearch>`_
satellite-based historic weather data with the following structure:
**ERA5 cutout:**
=================== ========== ========== =========================================================
Field Dimensions Unit Description
=================== ========== ========== =========================================================
pressure time, y, x Pa Surface pressure
------------------- ---------- ---------- ---------------------------------------------------------
temperature time, y, x K Air temperature 2 meters above the surface.
------------------- ---------- ---------- ---------------------------------------------------------
soil temperature time, y, x K Soil temperature between 1 meters and 3 meters
depth (layer 4).
------------------- ---------- ---------- ---------------------------------------------------------
influx_toa time, y, x Wm**-2 Top of Earth's atmosphere TOA incident solar radiation
------------------- ---------- ---------- ---------------------------------------------------------
influx_direct time, y, x Wm**-2 Total sky direct solar radiation at surface
------------------- ---------- ---------- ---------------------------------------------------------
runoff time, y, x m `Runoff <https://en.wikipedia.org/wiki/Surface_runoff>`_
(volume per area)
------------------- ---------- ---------- ---------------------------------------------------------
roughness y, x m Forecast surface roughness
(`roughness length <https://en.wikipedia.org/wiki/Roughness_length>`_)
------------------- ---------- ---------- ---------------------------------------------------------
height y, x m Surface elevation above sea level
------------------- ---------- ---------- ---------------------------------------------------------
albedo time, y, x -- `Albedo <https://en.wikipedia.org/wiki/Albedo>`_
measure of diffuse reflection of solar radiation.
Calculated from relation between surface solar radiation
downwards (Jm**-2) and surface net solar radiation
(Jm**-2). Takes values between 0 and 1.
------------------- ---------- ---------- ---------------------------------------------------------
influx_diffuse time, y, x Wm**-2 Diffuse solar radiation at surface.
Surface solar radiation downwards minus
direct solar radiation.
------------------- ---------- ---------- ---------------------------------------------------------
wnd100m time, y, x ms**-1 Wind speeds at 100 meters (regardless of direction)
=================== ========== ========== =========================================================
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.. image:: img/era5.png
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
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:scale: 40 %
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A **SARAH-3 cutout** can be used to amend the fields ``temperature``, ``influx_toa``, ``influx_direct``, ``albedo``,
``influx_diffuse`` of ERA5 using satellite-based radiation observations.
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
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.. image:: img/sarah.png
:scale: 40 %
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Description
-----------
"""
Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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import logging
Atlite availability (#224) * adjust buil_cutout.py and Snakefile * try adjusting build_renewable_profiles, currently crashing due to weird pyproj error * build_renewable_profiles: -remove printing gid * build_renewable_profiles: use dask for paralellization, use dense functions * build_renewable_profiles: - revise imports - add logging for long calculation - revise explaining comment - revise distance calculation * build profiles: adjust to cutout.grid * * fix area to square km * rename potmatrix -> capacity_potential * rename available to availibility * config.default update cutout params build_renewable_potentials: major refactoring and simplification hydro_profiles: update code * build profiles: fix weight output dimensions * build profiles: fix typo, fix selection of buses * build profiles: reinsert paths variable * follow up * build profiles: move to dask calculation only * CI: set build cutout to true (add CDSAPI) * build profiles: use pyproj, test with gleas and geokit upstream * environment.yaml fix atlite version * build profiles: use dask 'processes' for more than 25 regions * build profiles: specify dask scheduler according to number of regions * backpedal a bit, only allow scheduler='processes' * follow up, code style and fixup * build profiles: add logger info for underwater fraction calc * config adjust cutout parameters Snakefile fixup * config.default.yaml: adjust resolution * config: use one cutout in total build_cutout: automatic detetection of geographical boundaries * env: add python>=3.8 requirement build_cutout: fixup for region bound * config: allow base cutout * folllow up, fix up * follow up II * clean up * clean up II * build profiles: move back to multiprocessing due to performance issues * small code style corrections * move in pool context * swqitch to ratsterio * switch to rasterio for availibility calculation * tiny fixup * * build continental raster for offshore distance calculation * adjust Snakefile to new script build_raster * rename continental raster to onshore raster add projected_mask function (not yet tested) add docstrings, modularize * Snakefile: remove build_onhore_raster rule, build mask directly from geometry instead build_natura_raster: adjust code, add function for exporting build_profiles: * add buffer to shore distance to init_globals function * update docstrings * improve handling of nodata grid codes * add geometry mask if natura raster not activated (the 255 value is an 'eligible' value for the corine data base, do this for excluding data outside the shape) * build_profiles: adjust docstrings * update environment * build profiles: fixup reproject woth padding * follow up, small fixups * fix resampling method checkpoint: reproduces solar profile in tut data * reintegrate plot map code style * config: rename cutout into "base" * build profiles: adjust to new atlite code * natura raster: small fixup * build natura raster: compress tiff file * config: adjust cutout names * build profiles: cover case if no or partial overlap between natura raster and cutout * config-tutorial: adjust cutout params * buid-profifiles: fixup in gebco filter * follow up * update config files * build profiles: select layoutmatrix != 0 * build profiles: speed up average_distance and underwaterfraction * build profiles: fix typo * update release notes build_cutout: only build needed features * update envs * config: add temperature to sarah features * temporary fix for atlite v0.2.1 and new xarray version release * env: remove xarray specification * * remove rule build_country_flh * build profiles: remove sneaked in line * doc: update configuration.rst (section atlite) and corresponding csv table * release notes: fix quotes * build profiles: use 3035 for area calculation * Update envs/environment.docs.yaml * Update scripts/build_cutout.py * Update doc/release_notes.rst Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> * Update doc/configuration.rst Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/build_cutout.py Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> * update release notes * release notes: add deprecation of 'keep_all_available_areas' build profiles: remove warning for 'keep_all_available_areas' * build cutout: rearrage code, set buffer correctly * Rename tutorial cutout to remove name clash with real cutout. * Update release_notes.rst: Rename tutorial cutout. * retrieve: update cutouts and downloads (alternative) (#237) * retrieve: update cutouts and downloads * retrieve: remove unnecessary import * use snakemake remote file functionality * Snakefile: update zenodo link * update natura remote link (closes #234) * env: update atlite version to 0.2.2 * env: fix dask version due to memory issues * test: retrieve cutout instead of build * test: use tutorial cutout for CI Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> Co-authored-by: Fabian Neumann <fabian.neumann@outlook.de>
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import atlite
import geopandas as gpd
import pandas as pd
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from _helpers import configure_logging, set_scenario_config
Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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logger = logging.getLogger(__name__)
if __name__ == "__main__":
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
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if "snakemake" not in globals():
from _helpers import mock_snakemake
snakemake = mock_snakemake("build_cutout", cutout="europe-2013-sarah3-era5")
Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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configure_logging(snakemake)
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set_scenario_config(snakemake)
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cutout_params = snakemake.params.cutouts[snakemake.wildcards.cutout]
snapshots = pd.date_range(freq="h", **snakemake.params.snapshots)
Atlite availability (#224) * adjust buil_cutout.py and Snakefile * try adjusting build_renewable_profiles, currently crashing due to weird pyproj error * build_renewable_profiles: -remove printing gid * build_renewable_profiles: use dask for paralellization, use dense functions * build_renewable_profiles: - revise imports - add logging for long calculation - revise explaining comment - revise distance calculation * build profiles: adjust to cutout.grid * * fix area to square km * rename potmatrix -> capacity_potential * rename available to availibility * config.default update cutout params build_renewable_potentials: major refactoring and simplification hydro_profiles: update code * build profiles: fix weight output dimensions * build profiles: fix typo, fix selection of buses * build profiles: reinsert paths variable * follow up * build profiles: move to dask calculation only * CI: set build cutout to true (add CDSAPI) * build profiles: use pyproj, test with gleas and geokit upstream * environment.yaml fix atlite version * build profiles: use dask 'processes' for more than 25 regions * build profiles: specify dask scheduler according to number of regions * backpedal a bit, only allow scheduler='processes' * follow up, code style and fixup * build profiles: add logger info for underwater fraction calc * config adjust cutout parameters Snakefile fixup * config.default.yaml: adjust resolution * config: use one cutout in total build_cutout: automatic detetection of geographical boundaries * env: add python>=3.8 requirement build_cutout: fixup for region bound * config: allow base cutout * folllow up, fix up * follow up II * clean up * clean up II * build profiles: move back to multiprocessing due to performance issues * small code style corrections * move in pool context * swqitch to ratsterio * switch to rasterio for availibility calculation * tiny fixup * * build continental raster for offshore distance calculation * adjust Snakefile to new script build_raster * rename continental raster to onshore raster add projected_mask function (not yet tested) add docstrings, modularize * Snakefile: remove build_onhore_raster rule, build mask directly from geometry instead build_natura_raster: adjust code, add function for exporting build_profiles: * add buffer to shore distance to init_globals function * update docstrings * improve handling of nodata grid codes * add geometry mask if natura raster not activated (the 255 value is an 'eligible' value for the corine data base, do this for excluding data outside the shape) * build_profiles: adjust docstrings * update environment * build profiles: fixup reproject woth padding * follow up, small fixups * fix resampling method checkpoint: reproduces solar profile in tut data * reintegrate plot map code style * config: rename cutout into "base" * build profiles: adjust to new atlite code * natura raster: small fixup * build natura raster: compress tiff file * config: adjust cutout names * build profiles: cover case if no or partial overlap between natura raster and cutout * config-tutorial: adjust cutout params * buid-profifiles: fixup in gebco filter * follow up * update config files * build profiles: select layoutmatrix != 0 * build profiles: speed up average_distance and underwaterfraction * build profiles: fix typo * update release notes build_cutout: only build needed features * update envs * config: add temperature to sarah features * temporary fix for atlite v0.2.1 and new xarray version release * env: remove xarray specification * * remove rule build_country_flh * build profiles: remove sneaked in line * doc: update configuration.rst (section atlite) and corresponding csv table * release notes: fix quotes * build profiles: use 3035 for area calculation * Update envs/environment.docs.yaml * Update scripts/build_cutout.py * Update doc/release_notes.rst Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> * Update doc/configuration.rst Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/build_cutout.py Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> * update release notes * release notes: add deprecation of 'keep_all_available_areas' build profiles: remove warning for 'keep_all_available_areas' * build cutout: rearrage code, set buffer correctly * Rename tutorial cutout to remove name clash with real cutout. * Update release_notes.rst: Rename tutorial cutout. * retrieve: update cutouts and downloads (alternative) (#237) * retrieve: update cutouts and downloads * retrieve: remove unnecessary import * use snakemake remote file functionality * Snakefile: update zenodo link * update natura remote link (closes #234) * env: update atlite version to 0.2.2 * env: fix dask version due to memory issues * test: retrieve cutout instead of build * test: use tutorial cutout for CI Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> Co-authored-by: Fabian Neumann <fabian.neumann@outlook.de>
2021-04-27 15:58:31 +00:00
time = [snapshots[0], snapshots[-1]]
cutout_params["time"] = slice(*cutout_params.get("time", time))
if {"x", "y", "bounds"}.isdisjoint(cutout_params):
# Determine the bounds from bus regions with a buffer of two grid cells
onshore = gpd.read_file(snakemake.input.regions_onshore)
offshore = gpd.read_file(snakemake.input.regions_offshore)
regions = pd.concat([onshore, offshore])
Atlite availability (#224) * adjust buil_cutout.py and Snakefile * try adjusting build_renewable_profiles, currently crashing due to weird pyproj error * build_renewable_profiles: -remove printing gid * build_renewable_profiles: use dask for paralellization, use dense functions * build_renewable_profiles: - revise imports - add logging for long calculation - revise explaining comment - revise distance calculation * build profiles: adjust to cutout.grid * * fix area to square km * rename potmatrix -> capacity_potential * rename available to availibility * config.default update cutout params build_renewable_potentials: major refactoring and simplification hydro_profiles: update code * build profiles: fix weight output dimensions * build profiles: fix typo, fix selection of buses * build profiles: reinsert paths variable * follow up * build profiles: move to dask calculation only * CI: set build cutout to true (add CDSAPI) * build profiles: use pyproj, test with gleas and geokit upstream * environment.yaml fix atlite version * build profiles: use dask 'processes' for more than 25 regions * build profiles: specify dask scheduler according to number of regions * backpedal a bit, only allow scheduler='processes' * follow up, code style and fixup * build profiles: add logger info for underwater fraction calc * config adjust cutout parameters Snakefile fixup * config.default.yaml: adjust resolution * config: use one cutout in total build_cutout: automatic detetection of geographical boundaries * env: add python>=3.8 requirement build_cutout: fixup for region bound * config: allow base cutout * folllow up, fix up * follow up II * clean up * clean up II * build profiles: move back to multiprocessing due to performance issues * small code style corrections * move in pool context * swqitch to ratsterio * switch to rasterio for availibility calculation * tiny fixup * * build continental raster for offshore distance calculation * adjust Snakefile to new script build_raster * rename continental raster to onshore raster add projected_mask function (not yet tested) add docstrings, modularize * Snakefile: remove build_onhore_raster rule, build mask directly from geometry instead build_natura_raster: adjust code, add function for exporting build_profiles: * add buffer to shore distance to init_globals function * update docstrings * improve handling of nodata grid codes * add geometry mask if natura raster not activated (the 255 value is an 'eligible' value for the corine data base, do this for excluding data outside the shape) * build_profiles: adjust docstrings * update environment * build profiles: fixup reproject woth padding * follow up, small fixups * fix resampling method checkpoint: reproduces solar profile in tut data * reintegrate plot map code style * config: rename cutout into "base" * build profiles: adjust to new atlite code * natura raster: small fixup * build natura raster: compress tiff file * config: adjust cutout names * build profiles: cover case if no or partial overlap between natura raster and cutout * config-tutorial: adjust cutout params * buid-profifiles: fixup in gebco filter * follow up * update config files * build profiles: select layoutmatrix != 0 * build profiles: speed up average_distance and underwaterfraction * build profiles: fix typo * update release notes build_cutout: only build needed features * update envs * config: add temperature to sarah features * temporary fix for atlite v0.2.1 and new xarray version release * env: remove xarray specification * * remove rule build_country_flh * build profiles: remove sneaked in line * doc: update configuration.rst (section atlite) and corresponding csv table * release notes: fix quotes * build profiles: use 3035 for area calculation * Update envs/environment.docs.yaml * Update scripts/build_cutout.py * Update doc/release_notes.rst Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> * Update doc/configuration.rst Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/build_cutout.py Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> * update release notes * release notes: add deprecation of 'keep_all_available_areas' build profiles: remove warning for 'keep_all_available_areas' * build cutout: rearrage code, set buffer correctly * Rename tutorial cutout to remove name clash with real cutout. * Update release_notes.rst: Rename tutorial cutout. * retrieve: update cutouts and downloads (alternative) (#237) * retrieve: update cutouts and downloads * retrieve: remove unnecessary import * use snakemake remote file functionality * Snakefile: update zenodo link * update natura remote link (closes #234) * env: update atlite version to 0.2.2 * env: fix dask version due to memory issues * test: retrieve cutout instead of build * test: use tutorial cutout for CI Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> Co-authored-by: Fabian Neumann <fabian.neumann@outlook.de>
2021-04-27 15:58:31 +00:00
d = max(cutout_params.get("dx", 0.25), cutout_params.get("dy", 0.25)) * 2
cutout_params["bounds"] = regions.total_bounds + [-d, -d, d, d]
elif {"x", "y"}.issubset(cutout_params):
cutout_params["x"] = slice(*cutout_params["x"])
cutout_params["y"] = slice(*cutout_params["y"])
logging.info(f"Preparing cutout with parameters {cutout_params}.")
features = cutout_params.pop("features", None)
cutout = atlite.Cutout(snakemake.output[0], **cutout_params)
cutout.prepare(features=features)