b8a7685931
* adjust buil_cutout.py and Snakefile * try adjusting build_renewable_profiles, currently crashing due to weird pyproj error * build_renewable_profiles: -remove printing gid * build_renewable_profiles: use dask for paralellization, use dense functions * build_renewable_profiles: - revise imports - add logging for long calculation - revise explaining comment - revise distance calculation * build profiles: adjust to cutout.grid * * fix area to square km * rename potmatrix -> capacity_potential * rename available to availibility * config.default update cutout params build_renewable_potentials: major refactoring and simplification hydro_profiles: update code * build profiles: fix weight output dimensions * build profiles: fix typo, fix selection of buses * build profiles: reinsert paths variable * follow up * build profiles: move to dask calculation only * CI: set build cutout to true (add CDSAPI) * build profiles: use pyproj, test with gleas and geokit upstream * environment.yaml fix atlite version * build profiles: use dask 'processes' for more than 25 regions * build profiles: specify dask scheduler according to number of regions * backpedal a bit, only allow scheduler='processes' * follow up, code style and fixup * build profiles: add logger info for underwater fraction calc * config adjust cutout parameters Snakefile fixup * config.default.yaml: adjust resolution * config: use one cutout in total build_cutout: automatic detetection of geographical boundaries * env: add python>=3.8 requirement build_cutout: fixup for region bound * config: allow base cutout * folllow up, fix up * follow up II * clean up * clean up II * build profiles: move back to multiprocessing due to performance issues * small code style corrections * move in pool context * swqitch to ratsterio * switch to rasterio for availibility calculation * tiny fixup * * build continental raster for offshore distance calculation * adjust Snakefile to new script build_raster * rename continental raster to onshore raster add projected_mask function (not yet tested) add docstrings, modularize * Snakefile: remove build_onhore_raster rule, build mask directly from geometry instead build_natura_raster: adjust code, add function for exporting build_profiles: * add buffer to shore distance to init_globals function * update docstrings * improve handling of nodata grid codes * add geometry mask if natura raster not activated (the 255 value is an 'eligible' value for the corine data base, do this for excluding data outside the shape) * build_profiles: adjust docstrings * update environment * build profiles: fixup reproject woth padding * follow up, small fixups * fix resampling method checkpoint: reproduces solar profile in tut data * reintegrate plot map code style * config: rename cutout into "base" * build profiles: adjust to new atlite code * natura raster: small fixup * build natura raster: compress tiff file * config: adjust cutout names * build profiles: cover case if no or partial overlap between natura raster and cutout * config-tutorial: adjust cutout params * buid-profifiles: fixup in gebco filter * follow up * update config files * build profiles: select layoutmatrix != 0 * build profiles: speed up average_distance and underwaterfraction * build profiles: fix typo * update release notes build_cutout: only build needed features * update envs * config: add temperature to sarah features * temporary fix for atlite v0.2.1 and new xarray version release * env: remove xarray specification * * remove rule build_country_flh * build profiles: remove sneaked in line * doc: update configuration.rst (section atlite) and corresponding csv table * release notes: fix quotes * build profiles: use 3035 for area calculation * Update envs/environment.docs.yaml * Update scripts/build_cutout.py * Update doc/release_notes.rst Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> * Update doc/configuration.rst Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/build_cutout.py Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> * update release notes * release notes: add deprecation of 'keep_all_available_areas' build profiles: remove warning for 'keep_all_available_areas' * build cutout: rearrage code, set buffer correctly * Rename tutorial cutout to remove name clash with real cutout. * Update release_notes.rst: Rename tutorial cutout. * retrieve: update cutouts and downloads (alternative) (#237) * retrieve: update cutouts and downloads * retrieve: remove unnecessary import * use snakemake remote file functionality * Snakefile: update zenodo link * update natura remote link (closes #234) * env: update atlite version to 0.2.2 * env: fix dask version due to memory issues * test: retrieve cutout instead of build * test: use tutorial cutout for CI Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> Co-authored-by: Fabian Neumann <fabian.neumann@outlook.de>
127 lines
6.2 KiB
Python
127 lines
6.2 KiB
Python
"""
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Create cutouts with `atlite <https://atlite.readthedocs.io/en/latest/>`_.
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For this rule to work you must have
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- installed the `Copernicus Climate Data Store <https://cds.climate.copernicus.eu>`_ ``cdsapi`` package (`install with `pip``) and
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- registered and setup your CDS API key as described `on their website <https://cds.climate.copernicus.eu/api-how-to>`_.
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.. seealso::
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For details on the weather data read the `atlite documentation <https://atlite.readthedocs.io/en/latest/>`_.
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If you need help specifically for creating cutouts `the corresponding section in the atlite documentation <https://atlite.readthedocs.io/en/latest/examples/create_cutout.html>`_ should be helpful.
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Relevant Settings
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-----------------
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.. code:: yaml
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atlite:
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nprocesses:
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cutouts:
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{cutout}:
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.. seealso::
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Documentation of the configuration file ``config.yaml`` at
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:ref:`atlite_cf`
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Inputs
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------
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*None*
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Outputs
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-------
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- ``cutouts/{cutout}``: weather data from either the `ERA5 <https://www.ecmwf.int/en/forecasts/datasets/reanalysis-datasets/era5>`_
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reanalysis weather dataset or `SARAH-2 <https://wui.cmsaf.eu/safira/action/viewProduktSearch>`_
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satellite-based historic weather data with the following structure:
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**ERA5 cutout:**
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=================== ========== ========== =========================================================
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Field Dimensions Unit Description
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=================== ========== ========== =========================================================
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pressure time, y, x Pa Surface pressure
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------------------- ---------- ---------- ---------------------------------------------------------
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temperature time, y, x K Air temperature 2 meters above the surface.
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------------------- ---------- ---------- ---------------------------------------------------------
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soil temperature time, y, x K Soil temperature between 1 meters and 3 meters
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depth (layer 4).
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------------------- ---------- ---------- ---------------------------------------------------------
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influx_toa time, y, x Wm**-2 Top of Earth's atmosphere TOA incident solar radiation
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------------------- ---------- ---------- ---------------------------------------------------------
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influx_direct time, y, x Wm**-2 Total sky direct solar radiation at surface
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------------------- ---------- ---------- ---------------------------------------------------------
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runoff time, y, x m `Runoff <https://en.wikipedia.org/wiki/Surface_runoff>`_
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(volume per area)
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------------------- ---------- ---------- ---------------------------------------------------------
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roughness y, x m Forecast surface roughness
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(`roughness length <https://en.wikipedia.org/wiki/Roughness_length>`_)
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------------------- ---------- ---------- ---------------------------------------------------------
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height y, x m Surface elevation above sea level
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------------------- ---------- ---------- ---------------------------------------------------------
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albedo time, y, x -- `Albedo <https://en.wikipedia.org/wiki/Albedo>`_
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measure of diffuse reflection of solar radiation.
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Calculated from relation between surface solar radiation
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downwards (Jm**-2) and surface net solar radiation
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(Jm**-2). Takes values between 0 and 1.
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------------------- ---------- ---------- ---------------------------------------------------------
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influx_diffuse time, y, x Wm**-2 Diffuse solar radiation at surface.
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Surface solar radiation downwards minus
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direct solar radiation.
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------------------- ---------- ---------- ---------------------------------------------------------
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wnd100m time, y, x ms**-1 Wind speeds at 100 meters (regardless of direction)
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=================== ========== ========== =========================================================
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.. image:: ../img/era5.png
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:scale: 40 %
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A **SARAH-2 cutout** can be used to amend the fields ``temperature``, ``influx_toa``, ``influx_direct``, ``albedo``,
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``influx_diffuse`` of ERA5 using satellite-based radiation observations.
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.. image:: ../img/sarah.png
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:scale: 40 %
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Description
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-----------
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"""
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import logging
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import atlite
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import geopandas as gpd
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import pandas as pd
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from _helpers import configure_logging
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logger = logging.getLogger(__name__)
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if __name__ == "__main__":
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if 'snakemake' not in globals():
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from _helpers import mock_snakemake
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snakemake = mock_snakemake('build_cutout', cutout='europe-2013-era5')
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configure_logging(snakemake)
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cutout_params = snakemake.config['atlite']['cutouts'][snakemake.wildcards.cutout]
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snapshots = pd.date_range(freq='h', **snakemake.config['snapshots'])
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time = [snapshots[0], snapshots[-1]]
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cutout_params['time'] = slice(*cutout_params.get('time', time))
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if {'x', 'y', 'bounds'}.isdisjoint(cutout_params):
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# Determine the bounds from bus regions with a buffer of two grid cells
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onshore = gpd.read_file(snakemake.input.regions_onshore)
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offshore = gpd.read_file(snakemake.input.regions_offshore)
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regions = onshore.append(offshore)
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d = max(cutout_params.get('dx', 0.25), cutout_params.get('dy', 0.25))*2
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cutout_params['bounds'] = regions.total_bounds + [-d, -d, d, d]
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elif {'x', 'y'}.issubset(cutout_params):
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cutout_params['x'] = slice(*cutout_params['x'])
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cutout_params['y'] = slice(*cutout_params['y'])
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logging.info(f"Preparing cutout with parameters {cutout_params}.")
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features = cutout_params.pop('features', None)
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cutout = atlite.Cutout(snakemake.output[0], **cutout_params)
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cutout.prepare(features=features)
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