When retrieving a remote file over HTTP, Snakemake uses the
"last-modified" property in HTTP header as a proxy for `mtime` of the
remote file. If this time is more recent than the `mtime` of the
output of the retrieve rule, the rule is triggered and the remote file
is retrieved again (since it was apparently updated).
However, Zenodo periodically updates the "last-modified" property of
records retrieved over HTTP even if those records have not been
updated. This causes Snakemake to false assume that the records have
to downloaded again.
By setting `static=True` for datasets we know don't actually change,
we avoid this problem.
* adjust buil_cutout.py and Snakefile
* try adjusting build_renewable_profiles, currently crashing due to weird pyproj error
* build_renewable_profiles: -remove printing gid
* build_renewable_profiles: use dask for paralellization, use dense functions
* build_renewable_profiles:
- revise imports
- add logging for long calculation
- revise explaining comment
- revise distance calculation
* build profiles: adjust to cutout.grid
* * fix area to square km
* rename potmatrix -> capacity_potential
* rename available to availibility
* config.default update cutout params
build_renewable_potentials: major refactoring and simplification
hydro_profiles: update code
* build profiles: fix weight output dimensions
* build profiles: fix typo, fix selection of buses
* build profiles: reinsert paths variable
* follow up
* build profiles: move to dask calculation only
* CI: set build cutout to true (add CDSAPI)
* build profiles: use pyproj, test with gleas and geokit upstream
* environment.yaml fix atlite version
* build profiles: use dask 'processes' for more than 25 regions
* build profiles: specify dask scheduler according to number of regions
* backpedal a bit, only allow scheduler='processes'
* follow up, code style and fixup
* build profiles: add logger info for underwater fraction calc
* config adjust cutout parameters
Snakefile fixup
* config.default.yaml: adjust resolution
* config: use one cutout in total
build_cutout: automatic detetection of geographical boundaries
* env: add python>=3.8 requirement
build_cutout: fixup for region bound
* config: allow base cutout
* folllow up, fix up
* follow up II
* clean up
* clean up II
* build profiles: move back to multiprocessing due to performance issues
* small code style corrections
* move in pool context
* swqitch to ratsterio
* switch to rasterio for availibility calculation
* tiny fixup
* * build continental raster for offshore distance calculation
* adjust Snakefile to new script build_raster
* rename continental raster to onshore raster
add projected_mask function (not yet tested)
add docstrings, modularize
* Snakefile: remove build_onhore_raster rule, build mask directly from geometry instead
build_natura_raster: adjust code, add function for exporting
build_profiles:
* add buffer to shore distance to init_globals function
* update docstrings
* improve handling of nodata grid codes
* add geometry mask if natura raster not activated
(the 255 value is an 'eligible' value for the corine data base,
do this for excluding data outside the shape)
* build_profiles: adjust docstrings
* update environment
* build profiles: fixup reproject woth padding
* follow up, small fixups
* fix resampling method
checkpoint: reproduces solar profile in tut data
* reintegrate plot map
code style
* config: rename cutout into "base"
* build profiles: adjust to new atlite code
* natura raster: small fixup
* build natura raster: compress tiff file
* config: adjust cutout names
* build profiles: cover case if no or partial overlap between natura raster and cutout
* config-tutorial: adjust cutout params
* buid-profifiles: fixup in gebco filter
* follow up
* update config files
* build profiles: select layoutmatrix != 0
* build profiles: speed up average_distance and underwaterfraction
* build profiles: fix typo
* update release notes
build_cutout: only build needed features
* update envs
* config: add temperature to sarah features
* temporary fix for atlite v0.2.1 and new xarray version release
* env: remove xarray specification
* * remove rule build_country_flh
* build profiles: remove sneaked in line
* doc: update configuration.rst (section atlite) and corresponding csv table
* release notes: fix quotes
* build profiles: use 3035 for area calculation
* Update envs/environment.docs.yaml
* Update scripts/build_cutout.py
* Update doc/release_notes.rst
Co-authored-by: euronion <42553970+euronion@users.noreply.github.com>
* Update doc/configuration.rst
Co-authored-by: euronion <42553970+euronion@users.noreply.github.com>
* Update scripts/build_cutout.py
Co-authored-by: euronion <42553970+euronion@users.noreply.github.com>
* update release notes
* release notes: add deprecation of 'keep_all_available_areas'
build profiles: remove warning for 'keep_all_available_areas'
* build cutout: rearrage code, set buffer correctly
* Rename tutorial cutout to remove name clash with real cutout.
* Update release_notes.rst: Rename tutorial cutout.
* retrieve: update cutouts and downloads (alternative) (#237)
* retrieve: update cutouts and downloads
* retrieve: remove unnecessary import
* use snakemake remote file functionality
* Snakefile: update zenodo link
* update natura remote link (closes#234)
* env: update atlite version to 0.2.2
* env: fix dask version due to memory issues
* test: retrieve cutout instead of build
* test: use tutorial cutout for CI
Co-authored-by: euronion <42553970+euronion@users.noreply.github.com>
Co-authored-by: Fabian Neumann <fabian.neumann@outlook.de>
* release_notes: order for release
* doc: fix smaller typos and tidy up
* config: bump version
* doc: fix line references
* doc: bump confpy version
* envs: update fixed versions yaml
* Snakefile: simplify all_elec to all
* add option to use custom clustermaps from data folder
* adapt default config to custom busmap
* input file from Snakefile
* adapt input description
* add option to use custom clustermaps from data folder
* adapt default config to custom busmap
* input file from Snakefile
* adapt input description
* Snakefile: custom_busmap in cluster_network input is now csv
* cluster_network: custom_busmap is now read as csv file, adaptions of description
* simplify_network: adapt descriptions
* configfiles: add cutom_clustermaps switch
* unify clustarmap and busmap names
* unify clustermap and busmap names
* test/config: unify clustermap and busmap names
* cluster_network: make clustering_for_n_clusters compatible with simplify_network
* simplify_network: make compatible with changes in cluster_network.py
* Update scripts/cluster_network.py
* Update scripts/simplify_network.py
* Update scripts/simplify_network.py
* Update scripts/cluster_network.py
* Update scripts/cluster_network.py
* cluster_network: move custom_busmap flag to enable; simplify names
* cluster_network: move custom_busmap flag to enable; simplify names
* custom_busmap: add documentation
* cluster_network: add default for custom_busmap for compatibility with old configs
* cluster_network: add default for custom_busmap for compatibility with old configs
Co-authored-by: martha.frysztacki <eb5194@iai-esm003.iai.kit.edu>
Co-authored-by: Fabian Neumann <fabian.neumann@outlook.de>
* Separate config switches for retrieving and building cutout, natura raster.
* Include new switches in tutorial and test configs.
* Update release_notes.rst
* Update toplevel.csv
* Update tutorial.rst
* Update configuration.rst
* rewrite mocksnakemake for parsing real Snakefile
* continue add function to scripts
* going through all scripts, setting new mocksnakemake
* fix plotting scripts
* fix build_country_flh
* fix build_country_flh II
* adjust config files
* fix make_summary for tutorial network
* create dir also for output
* incorporate suggestions
* consistent import of mocksnakemake
* consistent import of mocksnakemake II
* Update scripts/_helpers.py
Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com>
* Update scripts/_helpers.py
Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com>
* Update scripts/_helpers.py
Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com>
* Update scripts/_helpers.py
Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com>
* Update scripts/plot_network.py
Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com>
* Update scripts/plot_network.py
Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com>
* Update scripts/retrieve_databundle.py
Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com>
* use pathlib for mocksnakemake
* rename mocksnakemake into mock_snakemake
* revert change in data
* Update scripts/_helpers.py
Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com>
* remove setting logfile in mock_snakemake, use Path in configure_logging
* fix fallback path and base_dir
fix return type of make_io_accessable
* reformulate mock_snakemake
* incorporate suggestion, fix typos
* mock_snakemake: apply absolute paths again, add assertion error
*.py: make hard coded io path accessable for mock_snakemake
* retrieve_natura_raster: use snakemake.output for fn_out
* include suggestion
* Apply suggestions from code review
Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de>
* linting, add return ad end of file
* Update scripts/plot_p_nom_max.py
Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de>
* Update scripts/plot_p_nom_max.py
fixes#112
Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de>
* plot_p_nom_max: small correction
* config.tutorial.yaml fix snapshots end
* use techs instead of technology
* revert try out from previous commit, complete replacing
* change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters
* change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
* Add logging to logfiles to all snakemake workflow scripts.
* Fix missing quotation marks in Snakefile.
* Apply suggestions from code review
Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de>
* Apply suggestions from code review
Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de>
* doc: fix _ec_ filenames in docs
* Allow logging message format to be specified in config.yaml.
* Add logging for Snakemake rule 'retrieve_databundle '.
* Add limited logging to STDERR only for retrieve_*.py scripts.
* Import progressbar module only on demand.
* Fix logging to file and enable concurrent printing to STDERR for most scripts.
* Add new 'logging_format' option to Travis CI test config.yaml.
* Add missing parenthesis (bug fix) and cross-os compatible paths.
* Fix typos in messages.
* Use correct log files for logging (bug fix).
* doc: fix line references
* config: logging_format in all configs
* doc: add doc for logging_format
* environment: update to powerplantmatching 0.4.3
* doc: update line references for tutorial.rst
* Change logging configuration scheme for config.yaml.
* Add helper function for doing basic logging configuration.
* Add logpath for prepare_links_p_nom rule.
* Outsource basic logging configuration for all scripts to _helper submodule.
* Update documentation for changed config.yaml structure.
Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used.
* _helpers: Change configure_logging signature.
elec_s_37_lc1.25_... adds a constraint on the total line cost for an extension
by a 25%, compare with elec_s_37_lv1.25_... for the line volume limit.
`ll` is an acronym for line limit.
They are still experimental and lead to difficult to understand bugs.
For now we are advising to use submit the whole model generation up until the
prepare_network step on one compute node, i.e. submit a job running
snakemake --until prepare_network --resources mem=60000 -j4
for a 64GB compute node.
And only run the solve_network rule in parallel on the cluster.
resources in rules have to be integer-valued and parameters are not aggregated
to groups. making cluster.yaml the only mechanism compatible with rules and
group.
- a network name like elec_s1000_ now clusters the network down to 1000 buses in
the simplify step.
- an 'm' after the number of clusters as in elec_s1000_181m_ skips the
aggregation of renewable generators and just moves them to the new clustered
bus in the second clustering step.
- to distribute the number of clusters to countries a small quadratic
optimization is now performed to minimize \sum_i (n_i - L_i/\sum_j L_j N)**2,
where n_i >= 1.
