bugfix: mock_snakemake configfiles

2022-01-25 12:57:04 +01:00 · 2022-01-25 12:57:04 +01:00 · b6cfcf6364
commit b6cfcf6364
parent 1bcbb1ed19
1 changed files with 1 additions and 1 deletions
--- a/scripts/helper.py
+++ b/scripts/helper.py
@ -66,7 +66,7 @@ def mock_snakemake(rulename, **wildcards):
        if os.path.exists(p):
            snakefile = p
            break
-    workflow = sm.Workflow(snakefile)
+    workflow = sm.Workflow(snakefile, overwrite_configfiles=[])
    workflow.include(snakefile)
    workflow.global_resources = {}
    rule = workflow.get_rule(rulename)