From b6cfcf6364e1037ce2bdad53504c8df7eb2b72b0 Mon Sep 17 00:00:00 2001
From: Fabian Neumann <fabian.neumann@outlook.de>
Date: Tue, 25 Jan 2022 12:57:04 +0100
Subject: [PATCH] bugfix: mock_snakemake configfiles

---
 scripts/helper.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/scripts/helper.py b/scripts/helper.py
index b176ccee..51411c2e 100644
--- a/scripts/helper.py
+++ b/scripts/helper.py
@@ -66,7 +66,7 @@ def mock_snakemake(rulename, **wildcards):
         if os.path.exists(p):
             snakefile = p
             break
-    workflow = sm.Workflow(snakefile)
+    workflow = sm.Workflow(snakefile, overwrite_configfiles=[])
     workflow.include(snakefile)
     workflow.global_resources = {}
     rule = workflow.get_rule(rulename)