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copy_config: ensure to store updated config

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Fabian 2023-08-15 15:49:57 +02:00
parent 3462080b89
commit 5036964dbe
1 changed files with 3 additions and 1 deletions
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4
scripts/copy_config.py
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@ -13,10 +13,12 @@ import yaml
if __name__ == "__main__": if __name__ == "__main__":
if "snakemake" not in globals(): if "snakemake" not in globals():
from _helpers import mock_snakemake from _helpers import mock_snakemake, set_scenario_config
snakemake = mock_snakemake("copy_config") snakemake = mock_snakemake("copy_config")
set_scenario_config(snakemake)
with open(snakemake.output[0], "w") as yaml_file: with open(snakemake.output[0], "w") as yaml_file:
yaml.dump( yaml.dump(
snakemake.config, snakemake.config,