From 5036964dbea41eaabf3695bdad1fad089ca8ef62 Mon Sep 17 00:00:00 2001
From: Fabian <fab.hof@gmx.de>
Date: Tue, 15 Aug 2023 15:49:57 +0200
Subject: [PATCH] copy_config: ensure to store updated config

---
 scripts/copy_config.py | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/scripts/copy_config.py b/scripts/copy_config.py
index a549d893..40025342 100644
--- a/scripts/copy_config.py
+++ b/scripts/copy_config.py
@@ -13,10 +13,12 @@ import yaml
 
 if __name__ == "__main__":
     if "snakemake" not in globals():
-        from _helpers import mock_snakemake
+        from _helpers import mock_snakemake, set_scenario_config
 
         snakemake = mock_snakemake("copy_config")
 
+    set_scenario_config(snakemake)
+
     with open(snakemake.output[0], "w") as yaml_file:
         yaml.dump(
             snakemake.config,