copy_config: ensure to store updated config

2023-08-15 15:49:57 +02:00 · 2023-08-15 15:49:57 +02:00 · 5036964dbe
commit 5036964dbe
parent 3462080b89
1 changed files with 3 additions and 1 deletions
--- a/scripts/copy_config.py
+++ b/scripts/copy_config.py
@ -13,10 +13,12 @@ import yaml

 if __name__ == "__main__":
    if "snakemake" not in globals():
-        from _helpers import mock_snakemake
+        from _helpers import mock_snakemake, set_scenario_config

        snakemake = mock_snakemake("copy_config")

+    set_scenario_config(snakemake)
+
    with open(snakemake.output[0], "w") as yaml_file:
        yaml.dump(
            snakemake.config,