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helpers: make copy of snakemake.config to avoid non-serializable JSON

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Fabian Neumann 2022-07-27 09:26:21 +02:00
parent 31bc87adba
commit 060bc49223
1 changed files with 1 additions and 1 deletions
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scripts/_helpers.py
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@ -29,7 +29,7 @@ def configure_logging(snakemake, skip_handlers=False):
import logging
kwargs = snakemake.config.get('logging', dict())
kwargs = snakemake.config.get('logging', dict()).copy()
kwargs.setdefault("level", "INFO")
if skip_handlers is False: