From 060bc492234b1fc4ad4129bea2e576401304b13f Mon Sep 17 00:00:00 2001 From: Fabian Neumann Date: Wed, 27 Jul 2022 09:26:21 +0200 Subject: [PATCH] helpers: make copy of snakemake.config to avoid non-serializable JSON --- scripts/_helpers.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scripts/_helpers.py b/scripts/_helpers.py index dc638915..435beee4 100644 --- a/scripts/_helpers.py +++ b/scripts/_helpers.py @@ -29,7 +29,7 @@ def configure_logging(snakemake, skip_handlers=False): import logging - kwargs = snakemake.config.get('logging', dict()) + kwargs = snakemake.config.get('logging', dict()).copy() kwargs.setdefault("level", "INFO") if skip_handlers is False: