pypsa-eur/Snakefile

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# SPDX-FileCopyrightText: : 2017-2024 The PyPSA-Eur Authors
#
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# SPDX-License-Identifier: MIT
from os.path import normpath, exists
from shutil import copyfile, move, rmtree
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from pathlib import Path
import yaml
Atlite availability (#224) * adjust buil_cutout.py and Snakefile * try adjusting build_renewable_profiles, currently crashing due to weird pyproj error * build_renewable_profiles: -remove printing gid * build_renewable_profiles: use dask for paralellization, use dense functions * build_renewable_profiles: - revise imports - add logging for long calculation - revise explaining comment - revise distance calculation * build profiles: adjust to cutout.grid * * fix area to square km * rename potmatrix -> capacity_potential * rename available to availibility * config.default update cutout params build_renewable_potentials: major refactoring and simplification hydro_profiles: update code * build profiles: fix weight output dimensions * build profiles: fix typo, fix selection of buses * build profiles: reinsert paths variable * follow up * build profiles: move to dask calculation only * CI: set build cutout to true (add CDSAPI) * build profiles: use pyproj, test with gleas and geokit upstream * environment.yaml fix atlite version * build profiles: use dask 'processes' for more than 25 regions * build profiles: specify dask scheduler according to number of regions * backpedal a bit, only allow scheduler='processes' * follow up, code style and fixup * build profiles: add logger info for underwater fraction calc * config adjust cutout parameters Snakefile fixup * config.default.yaml: adjust resolution * config: use one cutout in total build_cutout: automatic detetection of geographical boundaries * env: add python>=3.8 requirement build_cutout: fixup for region bound * config: allow base cutout * folllow up, fix up * follow up II * clean up * clean up II * build profiles: move back to multiprocessing due to performance issues * small code style corrections * move in pool context * swqitch to ratsterio * switch to rasterio for availibility calculation * tiny fixup * * build continental raster for offshore distance calculation * adjust Snakefile to new script build_raster * rename continental raster to onshore raster add projected_mask function (not yet tested) add docstrings, modularize * Snakefile: remove build_onhore_raster rule, build mask directly from geometry instead build_natura_raster: adjust code, add function for exporting build_profiles: * add buffer to shore distance to init_globals function * update docstrings * improve handling of nodata grid codes * add geometry mask if natura raster not activated (the 255 value is an 'eligible' value for the corine data base, do this for excluding data outside the shape) * build_profiles: adjust docstrings * update environment * build profiles: fixup reproject woth padding * follow up, small fixups * fix resampling method checkpoint: reproduces solar profile in tut data * reintegrate plot map code style * config: rename cutout into "base" * build profiles: adjust to new atlite code * natura raster: small fixup * build natura raster: compress tiff file * config: adjust cutout names * build profiles: cover case if no or partial overlap between natura raster and cutout * config-tutorial: adjust cutout params * buid-profifiles: fixup in gebco filter * follow up * update config files * build profiles: select layoutmatrix != 0 * build profiles: speed up average_distance and underwaterfraction * build profiles: fix typo * update release notes build_cutout: only build needed features * update envs * config: add temperature to sarah features * temporary fix for atlite v0.2.1 and new xarray version release * env: remove xarray specification * * remove rule build_country_flh * build profiles: remove sneaked in line * doc: update configuration.rst (section atlite) and corresponding csv table * release notes: fix quotes * build profiles: use 3035 for area calculation * Update envs/environment.docs.yaml * Update scripts/build_cutout.py * Update doc/release_notes.rst Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> * Update doc/configuration.rst Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/build_cutout.py Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> * update release notes * release notes: add deprecation of 'keep_all_available_areas' build profiles: remove warning for 'keep_all_available_areas' * build cutout: rearrage code, set buffer correctly * Rename tutorial cutout to remove name clash with real cutout. * Update release_notes.rst: Rename tutorial cutout. * retrieve: update cutouts and downloads (alternative) (#237) * retrieve: update cutouts and downloads * retrieve: remove unnecessary import * use snakemake remote file functionality * Snakefile: update zenodo link * update natura remote link (closes #234) * env: update atlite version to 0.2.2 * env: fix dask version due to memory issues * test: retrieve cutout instead of build * test: use tutorial cutout for CI Co-authored-by: euronion <42553970+euronion@users.noreply.github.com> Co-authored-by: Fabian Neumann <fabian.neumann@outlook.de>
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from snakemake.remote.HTTP import RemoteProvider as HTTPRemoteProvider
from snakemake.utils import min_version
from scripts._helpers import path_provider
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min_version("7.7")
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HTTP = HTTPRemoteProvider()
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default_files = {
"config/config.default.yaml": "config/config.yaml",
"config/scenarios.template.yaml": "config/scenarios.yaml",
}
for template, target in default_files.items():
target = os.path.join(workflow.current_basedir, target)
template = os.path.join(workflow.current_basedir, template)
if not exists(target) and exists(template):
copyfile(template, target)
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configfile: "config/config.default.yaml"
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configfile: "config/config.yaml"
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run = config["run"]
scenarios = run.get("scenarios", {})
if run["name"] and scenarios.get("enable"):
fn = Path(scenarios["file"])
scenarios = yaml.safe_load(fn.read_text())
RDIR = "{run}/"
if run["name"] == "all":
config["run"]["name"] = list(scenarios.keys())
elif run["name"]:
RDIR = run["name"] + "/"
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else:
RDIR = ""
logs = path_provider("logs/", RDIR, run["shared_resources"])
benchmarks = path_provider("benchmarks/", RDIR, run["shared_resources"])
resources = path_provider("resources/", RDIR, run["shared_resources"])
CDIR = "" if run["shared_cutouts"] else RDIR
RESULTS = "results/" + RDIR
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localrules:
purge,
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wildcard_constraints:
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weather_year="[0-9]{4}|",
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simpl="[a-zA-Z0-9]*",
clusters="[0-9]+(m|c)?|all",
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ll="(v|c)([0-9\.]+|opt)",
opts="[-+a-zA-Z0-9\.]*",
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sector_opts="[-+a-zA-Z0-9\.\s]*",
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include: "rules/common.smk"
include: "rules/collect.smk"
include: "rules/retrieve.smk"
include: "rules/build_electricity.smk"
include: "rules/build_sector.smk"
include: "rules/solve_electricity.smk"
include: "rules/postprocess.smk"
include: "rules/validate.smk"
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if config["foresight"] == "overnight":
include: "rules/solve_overnight.smk"
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if config["foresight"] == "myopic":
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include: "rules/solve_myopic.smk"
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if config["foresight"] == "perfect":
include: "rules/solve_perfect.smk"
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rule all:
input:
expand(RESULTS + "graphs/costs.pdf", run=config["run"]["name"]),
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default_target: True
rule create_scenarios:
output:
config["run"]["scenarios"]["file"],
conda:
"envs/retrieve.yaml"
script:
"config/create_scenarios.py"
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rule purge:
run:
import builtins
do_purge = builtins.input(
"Do you really want to delete all generated resources, \nresults and docs (downloads are kept)? [y/N] "
)
if do_purge == "y":
rmtree("resources/", ignore_errors=True)
rmtree("results/", ignore_errors=True)
rmtree("doc/_build", ignore_errors=True)
print("Purging generated resources, results and docs. Downloads are kept.")
else:
raise Exception(f"Input {do_purge}. Aborting purge.")
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rule dag:
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message:
"Creating DAG of workflow."
output:
dot=resources("dag.dot"),
pdf=resources("dag.pdf"),
png=resources("dag.png"),
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conda:
"envs/environment.yaml"
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shell:
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"""
snakemake --rulegraph all | sed -n "/digraph/,\$p" > {output.dot}
dot -Tpdf -o {output.pdf} {output.dot}
dot -Tpng -o {output.png} {output.dot}
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"""
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rule doc:
message:
"Build documentation."
output:
directory("doc/_build"),
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shell:
"make -C doc html"
rule sync:
params:
cluster=f"{config['remote']['ssh']}:{config['remote']['path']}",
shell:
"""
rsync -uvarh --ignore-missing-args --files-from=.sync-send . {params.cluster}
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rsync -uvarh --no-g {params.cluster}/resources . || echo "No resources directory, skipping rsync"
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rsync -uvarh --no-g {params.cluster}/results . || echo "No results directory, skipping rsync"
rsync -uvarh --no-g {params.cluster}/logs . || echo "No logs directory, skipping rsync"
"""