pypsa-eur/scripts/_helpers.py

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# SPDX-FileCopyrightText: : 2017-2022 The PyPSA-Eur Authors
#
2021-09-14 14:37:41 +00:00
# SPDX-License-Identifier: MIT
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import pandas as pd
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
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from pathlib import Path
REGION_COLS = ['geometry', 'name', 'x', 'y', 'country']
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Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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def configure_logging(snakemake, skip_handlers=False):
"""
Configure the basic behaviour for the logging module.
Note: Must only be called once from the __main__ section of a script.
The setup includes printing log messages to STDERR and to a log file defined
by either (in priority order): snakemake.log.python, snakemake.log[0] or "logs/{rulename}.log".
Additional keywords from logging.basicConfig are accepted via the snakemake configuration
file under snakemake.config.logging.
Parameters
----------
snakemake : snakemake object
Your snakemake object containing a snakemake.config and snakemake.log.
skip_handlers : True | False (default)
Do (not) skip the default handlers created for redirecting output to STDERR and file.
"""
import logging
kwargs = snakemake.config.get('logging', dict()).copy()
Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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kwargs.setdefault("level", "INFO")
if skip_handlers is False:
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
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fallback_path = Path(__file__).parent.joinpath('..', 'logs', f"{snakemake.rule}.log")
logfile = snakemake.log.get('python', snakemake.log[0] if snakemake.log
else fallback_path)
Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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kwargs.update(
{'handlers': [
# Prefer the 'python' log, otherwise take the first log for each
# Snakemake rule
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
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logging.FileHandler(logfile),
Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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logging.StreamHandler()
]
})
logging.basicConfig(**kwargs)
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def load_network(import_name=None, custom_components=None):
"""
Helper for importing a pypsa.Network with additional custom components.
Parameters
----------
import_name : str
As in pypsa.Network(import_name)
custom_components : dict
Dictionary listing custom components.
For using ``snakemake.config['override_components']``
in ``config.yaml`` define:
.. code:: yaml
override_components:
ShadowPrice:
component: ["shadow_prices","Shadow price for a global constraint.",np.nan]
attributes:
name: ["string","n/a","n/a","Unique name","Input (required)"]
value: ["float","n/a",0.,"shadow value","Output"]
Returns
-------
pypsa.Network
"""
import pypsa
from pypsa.descriptors import Dict
override_components = None
override_component_attrs = None
if custom_components is not None:
override_components = pypsa.components.components.copy()
override_component_attrs = Dict({k : v.copy() for k,v in pypsa.components.component_attrs.items()})
for k, v in custom_components.items():
override_components.loc[k] = v['component']
override_component_attrs[k] = pd.DataFrame(columns = ["type","unit","default","description","status"])
for attr, val in v['attributes'].items():
override_component_attrs[k].loc[attr] = val
return pypsa.Network(import_name=import_name,
override_components=override_components,
override_component_attrs=override_component_attrs)
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def pdbcast(v, h):
return pd.DataFrame(v.values.reshape((-1, 1)) * h.values,
index=v.index, columns=h.index)
def load_network_for_plots(fn, tech_costs, config, combine_hydro_ps=True):
Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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import pypsa
from add_electricity import update_transmission_costs, load_costs
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n = pypsa.Network(fn)
n.loads["carrier"] = n.loads.bus.map(n.buses.carrier) + " load"
n.stores["carrier"] = n.stores.bus.map(n.buses.carrier)
n.links["carrier"] = (n.links.bus0.map(n.buses.carrier) + "-" + n.links.bus1.map(n.buses.carrier))
n.lines["carrier"] = "AC line"
n.transformers["carrier"] = "AC transformer"
n.lines['s_nom'] = n.lines['s_nom_min']
n.links['p_nom'] = n.links['p_nom_min']
if combine_hydro_ps:
n.storage_units.loc[n.storage_units.carrier.isin({'PHS', 'hydro'}), 'carrier'] = 'hydro+PHS'
# if the carrier was not set on the heat storage units
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# bus_carrier = n.storage_units.bus.map(n.buses.carrier)
# n.storage_units.loc[bus_carrier == "heat","carrier"] = "water tanks"
Nyears = n.snapshot_weightings.objective.sum() / 8760.
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costs = load_costs(tech_costs, config['costs'], config['electricity'], Nyears)
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update_transmission_costs(n, costs)
return n
def update_p_nom_max(n):
# if extendable carriers (solar/onwind/...) have capacity >= 0,
# e.g. existing assets from the OPSD project are included to the network,
# the installed capacity might exceed the expansion limit.
# Hence, we update the assumptions.
n.generators.p_nom_max = n.generators[['p_nom_min', 'p_nom_max']].max(1)
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def aggregate_p_nom(n):
return pd.concat([
n.generators.groupby("carrier").p_nom_opt.sum(),
n.storage_units.groupby("carrier").p_nom_opt.sum(),
n.links.groupby("carrier").p_nom_opt.sum(),
n.loads_t.p.groupby(n.loads.carrier,axis=1).sum().mean()
])
def aggregate_p(n):
return pd.concat([
n.generators_t.p.sum().groupby(n.generators.carrier).sum(),
n.storage_units_t.p.sum().groupby(n.storage_units.carrier).sum(),
n.stores_t.p.sum().groupby(n.stores.carrier).sum(),
-n.loads_t.p.sum().groupby(n.loads.carrier).sum()
])
def aggregate_e_nom(n):
return pd.concat([
(n.storage_units["p_nom_opt"]*n.storage_units["max_hours"]).groupby(n.storage_units["carrier"]).sum(),
n.stores["e_nom_opt"].groupby(n.stores.carrier).sum()
])
def aggregate_p_curtailed(n):
return pd.concat([
((n.generators_t.p_max_pu.sum().multiply(n.generators.p_nom_opt) - n.generators_t.p.sum())
.groupby(n.generators.carrier).sum()),
((n.storage_units_t.inflow.sum() - n.storage_units_t.p.sum())
.groupby(n.storage_units.carrier).sum())
])
def aggregate_costs(n, flatten=False, opts=None, existing_only=False):
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
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components = dict(Link=("p_nom", "p0"),
Generator=("p_nom", "p"),
StorageUnit=("p_nom", "p"),
Store=("e_nom", "p"),
Line=("s_nom", None),
Transformer=("s_nom", None))
costs = {}
for c, (p_nom, p_attr) in zip(
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n.iterate_components(components.keys(), skip_empty=False),
components.values()
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):
if c.df.empty: continue
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if not existing_only: p_nom += "_opt"
costs[(c.list_name, 'capital')] = (c.df[p_nom] * c.df.capital_cost).groupby(c.df.carrier).sum()
if p_attr is not None:
p = c.pnl[p_attr].sum()
if c.name == 'StorageUnit':
p = p.loc[p > 0]
costs[(c.list_name, 'marginal')] = (p*c.df.marginal_cost).groupby(c.df.carrier).sum()
costs = pd.concat(costs)
if flatten:
assert opts is not None
conv_techs = opts['conv_techs']
costs = costs.reset_index(level=0, drop=True)
costs = costs['capital'].add(
costs['marginal'].rename({t: t + ' marginal' for t in conv_techs}),
fill_value=0.
)
return costs
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def progress_retrieve(url, file):
Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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import urllib
from progressbar import ProgressBar
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pbar = ProgressBar(0, 100)
def dlProgress(count, blockSize, totalSize):
pbar.update( int(count * blockSize * 100 / totalSize) )
urllib.request.urlretrieve(url, file, reporthook=dlProgress)
def get_aggregation_strategies(aggregation_strategies):
# default aggregation strategies that cannot be defined in .yaml format must be specified within
# the function, otherwise (when defaults are passed in the function's definition) they get lost
# when custom values are specified in the config.
import numpy as np
from pypsa.networkclustering import _make_consense
bus_strategies = dict(country=_make_consense("Bus", "country"))
bus_strategies.update(aggregation_strategies.get("buses", {}))
generator_strategies = {'build_year': lambda x: 0, 'lifetime': lambda x: np.inf}
generator_strategies.update(aggregation_strategies.get("generators", {}))
return bus_strategies, generator_strategies
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
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def mock_snakemake(rulename, **wildcards):
"""
This function is expected to be executed from the 'scripts'-directory of '
the snakemake project. It returns a snakemake.script.Snakemake object,
based on the Snakefile.
If a rule has wildcards, you have to specify them in **wildcards.
Parameters
----------
rulename: str
name of the rule for which the snakemake object should be generated
**wildcards:
keyword arguments fixing the wildcards. Only necessary if wildcards are
needed.
"""
import snakemake as sm
import os
from pypsa.descriptors import Dict
from snakemake.script import Snakemake
from packaging.version import Version, parse
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
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script_dir = Path(__file__).parent.resolve()
assert Path.cwd().resolve() == script_dir, \
f'mock_snakemake has to be run from the repository scripts directory {script_dir}'
os.chdir(script_dir.parent)
for p in sm.SNAKEFILE_CHOICES:
if os.path.exists(p):
snakefile = p
break
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kwargs = dict(rerun_triggers=[]) if parse(sm.__version__) > Version("7.7.0") else {}
workflow = sm.Workflow(snakefile, overwrite_configfiles=[], **kwargs)
Introduce mocksnakemake which acutally parses Snakefile (#107) * rewrite mocksnakemake for parsing real Snakefile * continue add function to scripts * going through all scripts, setting new mocksnakemake * fix plotting scripts * fix build_country_flh * fix build_country_flh II * adjust config files * fix make_summary for tutorial network * create dir also for output * incorporate suggestions * consistent import of mocksnakemake * consistent import of mocksnakemake II * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/plot_network.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * Update scripts/retrieve_databundle.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * use pathlib for mocksnakemake * rename mocksnakemake into mock_snakemake * revert change in data * Update scripts/_helpers.py Co-Authored-By: euronion <42553970+euronion@users.noreply.github.com> * remove setting logfile in mock_snakemake, use Path in configure_logging * fix fallback path and base_dir fix return type of make_io_accessable * reformulate mock_snakemake * incorporate suggestion, fix typos * mock_snakemake: apply absolute paths again, add assertion error *.py: make hard coded io path accessable for mock_snakemake * retrieve_natura_raster: use snakemake.output for fn_out * include suggestion * Apply suggestions from code review Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * linting, add return ad end of file * Update scripts/plot_p_nom_max.py Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * Update scripts/plot_p_nom_max.py fixes #112 Co-Authored-By: Jonas Hörsch <jonas.hoersch@posteo.de> * plot_p_nom_max: small correction * config.tutorial.yaml fix snapshots end * use techs instead of technology * revert try out from previous commit, complete replacing * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters * change clusters -> clusts in plot_p_nom_max due to wildcard constraints of clusters II
2019-12-09 20:29:15 +00:00
workflow.include(snakefile)
workflow.global_resources = {}
rule = workflow.get_rule(rulename)
dag = sm.dag.DAG(workflow, rules=[rule])
wc = Dict(wildcards)
job = sm.jobs.Job(rule, dag, wc)
def make_accessable(*ios):
for io in ios:
for i in range(len(io)):
io[i] = os.path.abspath(io[i])
make_accessable(job.input, job.output, job.log)
snakemake = Snakemake(job.input, job.output, job.params, job.wildcards,
job.threads, job.resources, job.log,
job.dag.workflow.config, job.rule.name, None,)
# create log and output dir if not existent
for path in list(snakemake.log) + list(snakemake.output):
Path(path).parent.mkdir(parents=True, exist_ok=True)
os.chdir(script_dir)
return snakemake