Fabian Neumann
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483f3e1b82
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eliminate manual country code conversion, adjust mock_snakemake to ll wildcard
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2023-03-09 08:36:18 +01:00 |
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pre-commit-ci[bot]
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f717ce9d3d
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[pre-commit.ci] auto fixes from pre-commit.com hooks
for more information, see https://pre-commit.ci
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2023-03-08 18:26:43 +00:00 |
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Fabian Neumann
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7405377fd7
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snakefmt to Snakefile
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2023-03-08 19:22:29 +01:00 |
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Fabian Neumann
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bf895de7cc
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add logfiles to all rules
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2023-03-08 19:22:00 +01:00 |
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Fabian Neumann
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abbf91ff9e
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retrieval rules get retries directive for added robustness
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2023-03-08 18:09:31 +01:00 |
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Fabian Neumann
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701d3a141a
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data/bundle files may be ancient
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2023-03-08 18:03:49 +01:00 |
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Fabian Neumann
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37a063554d
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make cutouts protected
https://snakemake.readthedocs.io/en/stable/snakefiles/rules.html\#protected-and-temporary-files
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2023-03-08 17:56:50 +01:00 |
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Fabian Neumann
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4b3372b53b
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apply snakefmt to rules/
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2023-03-08 17:46:14 +01:00 |
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Fabian Neumann
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2d648dac40
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correct paths to scripts in .smk files
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2023-03-08 17:45:25 +01:00 |
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Fabian Neumann
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8eb37bc263
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add conda directive to all rules for use with --use-conda
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2023-03-08 17:44:25 +01:00 |
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Fabian Neumann
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6bae022d44
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modularise Snakefile using rules/*.smk files
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2023-03-08 17:29:01 +01:00 |
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