Commit Graph

7 Commits

Author SHA1 Message Date
euronion
85c356297a Add logging to logfiles to all snakemake workflow scripts. (#102)
* Add logging to logfiles to all snakemake workflow scripts.

* Fix missing quotation marks in Snakefile.

* Apply suggestions from code review

Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de>

* Apply suggestions from code review

Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de>

* doc: fix _ec_ filenames in docs

* Allow logging message format to be specified in config.yaml.

* Add logging for Snakemake rule 'retrieve_databundle '.

* Add limited logging to STDERR only for retrieve_*.py scripts.

* Import progressbar module only on demand.

* Fix logging to file and enable concurrent printing to STDERR for most scripts.

* Add new 'logging_format' option to Travis CI test config.yaml.

* Add missing parenthesis (bug fix) and cross-os compatible paths.

* Fix typos in messages.

* Use correct log files for logging (bug fix).

* doc: fix line references

* config: logging_format in all configs

* doc: add doc for logging_format

* environment: update to powerplantmatching 0.4.3

* doc: update line references for tutorial.rst

* Change logging configuration scheme for config.yaml.

* Add helper function for doing basic logging configuration.

* Add logpath for prepare_links_p_nom rule.

* Outsource basic logging configuration for all scripts to _helper submodule.

* Update documentation for changed config.yaml structure.

Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used.

* _helpers: Change configure_logging signature.
2019-11-28 08:22:52 +01:00
Fabian Neumann
a5d9bc9c7c add input/output descriptions (WIP) 2019-08-11 22:34:18 +02:00
Fabian Neumann
1bded0ab9b add rule section headers 2019-08-11 11:40:47 +02:00
Jonas Hoersch
fb0d44f64e Add a summary sentence for each rule taken from scripts 2019-08-08 15:07:08 +02:00
Jonas Hoersch
f70e0304e5 Fix plotting settings 2019-01-16 12:08:46 +01:00
Jonas Hörsch
5b201de7d4 {make,plot}_summary: Add rules to flexibly create summaries and plot them 2018-10-26 10:28:54 +02:00
Tom Brown
540985164f Plot summary; take account of snapshot weightings correctly 2018-10-23 17:02:03 +02:00