Commit Graph

6 Commits

Author SHA1 Message Date
euronion
85c356297a Add logging to logfiles to all snakemake workflow scripts. (#102)
* Add logging to logfiles to all snakemake workflow scripts.

* Fix missing quotation marks in Snakefile.

* Apply suggestions from code review

Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de>

* Apply suggestions from code review

Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de>

* doc: fix _ec_ filenames in docs

* Allow logging message format to be specified in config.yaml.

* Add logging for Snakemake rule 'retrieve_databundle '.

* Add limited logging to STDERR only for retrieve_*.py scripts.

* Import progressbar module only on demand.

* Fix logging to file and enable concurrent printing to STDERR for most scripts.

* Add new 'logging_format' option to Travis CI test config.yaml.

* Add missing parenthesis (bug fix) and cross-os compatible paths.

* Fix typos in messages.

* Use correct log files for logging (bug fix).

* doc: fix line references

* config: logging_format in all configs

* doc: add doc for logging_format

* environment: update to powerplantmatching 0.4.3

* doc: update line references for tutorial.rst

* Change logging configuration scheme for config.yaml.

* Add helper function for doing basic logging configuration.

* Add logpath for prepare_links_p_nom rule.

* Outsource basic logging configuration for all scripts to _helper submodule.

* Update documentation for changed config.yaml structure.

Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used.

* _helpers: Change configure_logging signature.
2019-11-28 08:22:52 +01:00
JanFrederickUnnewehr
6cde3e902b own databundle (#96)
* config.default.yaml

* retrieve_databundle: docs, config and defaults

* fix capitalisation of true/false
2019-11-19 15:56:44 +01:00
Fabian Neumann
e54119d878
cluster: add focus weights (in favor of #26) (#87)
* cluster: add focus weights (in favor of #26)

* clear assert of total focus

Co-Authored-By: FabianHofmann <hofmann@fias.uni-frankfurt.de>
2019-11-07 15:38:25 +01:00
Fabian Neumann
2ace4f2e94 retrieve*: add documentation 2019-11-06 14:50:59 +01:00
Fabian Neumann
6aa6b20e26 more config tables and fixed table widths 2019-08-07 17:58:28 +02:00
Fabian Neumann
7a4e9f22d4 configuration table descriptions 2019-08-07 10:56:23 +02:00