hot fix for snakemake bug

2021-12-15 11:02:03 +01:00 · 2021-12-15 11:02:03 +01:00 · ed83988ed1
commit ed83988ed1
parent f06c7958bc
1 changed files with 1 additions and 1 deletions
--- a/scripts/_helpers.py
+++ b/scripts/_helpers.py
@ -240,7 +240,7 @@ def mock_snakemake(rulename, **wildcards):
        if os.path.exists(p):
            snakefile = p
            break
-    workflow = sm.Workflow(snakefile)
+    workflow = sm.Workflow(snakefile, overwrite_configfiles=[])
    workflow.include(snakefile)
    workflow.global_resources = {}
    rule = workflow.get_rule(rulename)