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Make copying default config file compatible with snakemake module

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This commit is contained in:
Koen van Greevenbroek 2024-01-24 14:47:20 +01:00
parent 2bee36be87
commit e4a130353f
1 changed files with 4 additions and 3 deletions
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Snakefile
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@ -13,9 +13,10 @@ from snakemake.utils import min_version
min_version("7.7") min_version("7.7")
conf_file = os.path.join(workflow.current_basedir, "config/config.yaml")
if not exists("config/config.yaml") and exists("config/config.default.yaml"): conf_default_file = os.path.join(workflow.current_basedir, "config/config.default.yaml")
copyfile("config/config.default.yaml", "config/config.yaml") if not exists(conf_file) and exists(conf_default_file):
copyfile(conf_default_file, conf_file)
configfile: "config/config.yaml" configfile: "config/config.yaml"