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Snakefile: Update memory requirements of solve_network

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Jonas Hörsch 2018-10-22 23:28:56 +02:00
parent 2b68ebadd5
commit d3d52cc60f
1 changed files with 8 additions and 2 deletions
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Snakefile
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@ -203,10 +203,16 @@ rule prepare_network:
script: "scripts/prepare_network.py" script: "scripts/prepare_network.py"
def memory(w): def memory(w):
factor = 3.
for o in w.opts.split('-'):
m = re.match(r'^(\d+)h$', o, re.IGNORECASE)
if m is not None:
factor /= int(m.group(1))
break
if w.clusters.endswith('m'): if w.clusters.endswith('m'):
return 18000 + 180 * int(w.clusters[:-1]) return int(factor * (18000 + 180 * int(w.clusters[:-1])))
else: else:
return 10000 + 190 * int(w.clusters) return int(factor * (10000 + 190 * int(w.clusters)))
# return 4890+310 * int(w.clusters) # return 4890+310 * int(w.clusters)
rule solve_network: rule solve_network: