environment.yaml: Separate dependencies of pip packages more cleanly
Dependencies are either of atlite, pypsa or the workflow itself. Use snakemake-minimal instead of snakemake (fixes #39)
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@ -4,26 +4,30 @@ channels:
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- bioconda
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- bioconda
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dependencies:
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dependencies:
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- python
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- python
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- pip
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# Dependencies of PyPSA
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- six
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- six
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- snakemake
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- numpy
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- numpy
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- pyomo
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- pyomo
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- scipy
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- scipy
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- pandas>=0.22.0
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- pandas>=0.22.0
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- matplotlib
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- matplotlib
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- seaborn
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- memory_profiler
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- memory_profiler
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- networkx>=1.10
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- networkx>=1.10
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- netcdf4
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- pytables
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# Dependencies of the workflow itself
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- xlrd
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- xlrd
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- scikit-learn
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- scikit-learn
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- pytables
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- pycountry
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- pycountry
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- seaborn
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- snakemake-minimal
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# Second order dependencies which should really be deps of atlite
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# Second order dependencies which should really be deps of atlite
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- xarray
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- xarray
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- netcdf4
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- bottleneck
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- bottleneck
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- cyordereddict
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- toolz
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- toolz
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- dask
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- dask
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- progressbar2
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- progressbar2
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@ -33,6 +37,7 @@ dependencies:
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- ipython
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- ipython
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# GIS dependencies have to come all from conda-forge
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# GIS dependencies have to come all from conda-forge
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- conda-forge::cartopy
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- conda-forge::fiona
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- conda-forge::fiona
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- conda-forge::pyproj
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- conda-forge::pyproj
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- conda-forge::pyshp
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- conda-forge::pyshp
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@ -50,4 +55,3 @@ dependencies:
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- git+https://github.com/PyPSA/glaes.git#egg=glaes
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- git+https://github.com/PyPSA/glaes.git#egg=glaes
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- git+https://github.com/PyPSA/geokit.git#egg=geokit
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- git+https://github.com/PyPSA/geokit.git#egg=geokit
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#- git+https://github.com/FRESNA/powerplantmatching.git#egg=powerplantmatching
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#- git+https://github.com/FRESNA/powerplantmatching.git#egg=powerplantmatching
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