environment.yaml: Separate dependencies of pip packages more cleanly

Dependencies are either of atlite, pypsa or the workflow itself.

Use snakemake-minimal instead of snakemake (fixes #39)
This commit is contained in:
Jonas Hoersch 2019-05-26 10:24:42 +02:00
parent 25923d6a40
commit 97eaebb0ea

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@ -4,26 +4,30 @@ channels:
- bioconda - bioconda
dependencies: dependencies:
- python - python
- pip
# Dependencies of PyPSA
- six - six
- snakemake
- numpy - numpy
- pyomo - pyomo
- scipy - scipy
- pandas>=0.22.0 - pandas>=0.22.0
- matplotlib - matplotlib
- seaborn
- memory_profiler - memory_profiler
- networkx>=1.10 - networkx>=1.10
- netcdf4
- pytables
# Dependencies of the workflow itself
- xlrd - xlrd
- scikit-learn - scikit-learn
- pytables
- pycountry - pycountry
- seaborn
- snakemake-minimal
# Second order dependencies which should really be deps of atlite # Second order dependencies which should really be deps of atlite
- xarray - xarray
- netcdf4
- bottleneck - bottleneck
- cyordereddict
- toolz - toolz
- dask - dask
- progressbar2 - progressbar2
@ -33,6 +37,7 @@ dependencies:
- ipython - ipython
# GIS dependencies have to come all from conda-forge # GIS dependencies have to come all from conda-forge
- conda-forge::cartopy
- conda-forge::fiona - conda-forge::fiona
- conda-forge::pyproj - conda-forge::pyproj
- conda-forge::pyshp - conda-forge::pyshp
@ -50,4 +55,3 @@ dependencies:
- git+https://github.com/PyPSA/glaes.git#egg=glaes - git+https://github.com/PyPSA/glaes.git#egg=glaes
- git+https://github.com/PyPSA/geokit.git#egg=geokit - git+https://github.com/PyPSA/geokit.git#egg=geokit
#- git+https://github.com/FRESNA/powerplantmatching.git#egg=powerplantmatching #- git+https://github.com/FRESNA/powerplantmatching.git#egg=powerplantmatching