update conda environment files

environment.docs.yaml

@@ -5,7 +5,8 @@ channels:
 dependencies:
   #- python
   - pip
-  - pypsa>=0.14
+  #- pypsa>=0.14  # until pypsa/pypsa#102 closed
+  - atlite
 
   # Dependencies of the workflow itself
   #- xlrd
@@ -15,6 +16,7 @@ dependencies:
   #- snakemake-minimal
   - memory_profiler
   - yaml
+  - pytables
 
   # Second order dependencies which should really be deps of atlite
   - xarray
@@ -30,7 +32,7 @@ dependencies:
   # GIS dependencies have to come all from conda-forge
   - conda-forge::cartopy
   - conda-forge::fiona
-  - conda-forge::pyproj=1.9.5.1
+  - conda-forge::pyproj<=2.2.2
   - conda-forge::pyshp
   - conda-forge::geopandas
   - conda-forge::rasterio
@@ -39,8 +41,8 @@ dependencies:
 
   # The FRESNA/KIT stuff is not packaged for conda yet
   - pip:
-    - vresutils>=0.2.5
+    - vresutils>=0.3
-    - git+https://github.com/FRESNA/atlite.git#egg=atlite
+    - git+https://github.com/PyPSA/pypsa.git#egg=pypsa # until pypsa/pypsa#102 closed
     - git+https://github.com/PyPSA/glaes.git#egg=glaes
     - git+https://github.com/PyPSA/geokit.git#egg=geokit
     - cdsapi

environment.fixedversions.yaml

@@ -2,257 +2,224 @@ name: pypsa-eur
 channels:
   - bioconda
   - conda-forge
+  - http://conda.anaconda.org/gurobi
   - defaults
 dependencies:
-  - coincbc
+  - _libgcc_mutex=0.1
-  - ipopt
+  - affine=2.3.0
-  - snakemake=5.4.0=0
+  - appdirs=1.4.3
-  - snakemake-minimal=5.4.0=py_0
+  - asn1crypto=1.2.0
-  - affine=2.2.1=py_0
+  - atlite=0.0.2
-  - aioeasywebdav=2.2.0=py36_0
+  - atomicwrites=1.3.0
-  - aiohttp=3.4.2=py36h470a237_0
+  - attrs=19.3.0
-  - appdirs=1.4.3=py_1
+  - backcall=0.1.0
-  - asn1crypto=0.24.0=py36_3
+  - blosc=1.17.0
-  - async-timeout=3.0.0=py36_0
+  - bokeh=1.3.4
-  - attrs=18.2.0=py_0
+  - boost-cpp=1.68.0
-  - backcall=0.1.0=py_0
+  - bottleneck=1.2.1
-  - basemap=1.2.0=py36h50ae964_0
+  - bzip2=1.0.8
-  - basemap-data-hires=1.2.0=0
+  - ca-certificates=2019.9.11
-  - blas=1.1=openblas
+  - cairo=1.16.0
-  - blosc=1.14.4=hfc679d8_0
+  - cartopy=0.17.0
-  - bokeh=0.13.0=py36_0
+  - certifi=2019.9.11
-  - boost-cpp=1.67.0=h3a22d5f_0
+  - cffi=1.13.1
-  - boto3=1.8.5=py_0
+  - cfitsio=3.470
-  - botocore=1.11.6=py_0
+  - chardet=3.0.4
-  - bottleneck=1.2.1=py36h7eb728f_1
+  - click=7.0
-  - bzip2=1.0.6=h470a237_2
+  - click-plugins=1.1.1
-  - ca-certificates=2018.11.29=ha4d7672_0
+  - cligj=0.5.0
-  - cachetools=2.1.0=py_0
+  - cloudpickle=1.2.2
-  - cairo=1.14.12=he6fea26_5
+  - configargparse=0.13.0
-  - certifi=2018.11.29=py36_1000
+  - cryptography=2.7
-  - cffi=1.11.5=py36h5e8e0c9_1
+  - curl=7.65.3
-  - cftime=1.0.1=py36h7eb728f_0
+  - cycler=0.10.0
-  - chardet=3.0.4=py36_3
+  - cytoolz=0.10.0
-  - click=6.7=py_1
+  - dask=2.6.0
-  - click-plugins=1.0.3=py_1
+  - dask-core=2.6.0
-  - cligj=0.5.0=py_0
+  - datrie=0.8
-  - cloudpickle=0.5.5=py_0
+  - decorator=4.4.1
-  - conda-wrappers=1.0.3=py36_0
+  - distributed=2.6.0
-  - configargparse=0.13.0=py_1
+  - docutils=0.15.2
-  - cryptography=2.3.1=py36hdffb7b8_0
+  - expat=2.2.5
-  - cryptography-vectors=2.3.1=py36_0
+  - fiona=1.8.9.post2
-  - curl=7.61.0=h93b3f91_1
+  - fontconfig=2.13.1
-  - cycler=0.10.0=py_1
+  - freetype=2.10.0
-  - cytoolz=0.9.0.1=py36h470a237_0
+  - freexl=1.0.5
-  - dask=0.19.0=py_0
+  - fsspec=0.5.2
-  - dask-core=0.19.0=py_0
+  - gdal=2.4.2
-  - dbus=1.13.0=h3a4f0e9_0
+  - geopandas=0.6.1
-  - decorator=4.3.0=py_0
+  - geos=3.7.2
-  - descartes=1.1.0=py_2
+  - geotiff=1.5.1
-  - distributed=1.23.0=py36_0
+  - gettext=0.19.8.1
-  - docutils=0.14=py36_1
+  - giflib=5.1.7
-  - dropbox=9.0.0=py_0
+  - gitdb2=2.0.6
-  - exec-wrappers=1.1.1=py_0
+  - gitpython=3.0.4
-  - expat=2.2.5=hfc679d8_2
+  - glib=2.58.3
-  - filechunkio=1.8=py_2
+  - hdf4=4.2.13
-  - fiona=1.8.4=py36hfc77a4a_1
+  - hdf5=1.10.4
-  - fontconfig=2.13.0=h65d0f4c_5
+  - heapdict=1.0.1
-  - freetype=2.9.1=h6debe1e_1
+  - icu=58.2
-  - freexl=1.0.5=hf837533_1
+  - idna=2.8
-  - ftputil=3.4=py_0
+  - importlib_metadata=0.23
-  - gdal=2.3.2=py36hb00a9d7_0
+  - ipython=7.9.0
-  - geopandas=0.4.0=py_1
+  - ipython_genutils=0.2.0
-  - geos=3.6.2=hfc679d8_3
+  - jedi=0.15.1
-  - geotiff=1.4.2=hb54a4aa_2
+  - jinja2=2.10.3
-  - gettext=0.19.8.1=0
+  - joblib=0.14.0
-  - giflib=5.1.4=h470a237_1
+  - jpeg=9c
-  - gitdb2=2.0.5=py_0
+  - json-c=0.13.1
-  - gitpython=2.1.11=py_0
+  - jsonschema=3.1.1
-  - glib=2.55.0=h464dc38_2
+  - kealib=1.4.10
-  - google-auth=1.5.1=py_0
+  - kiwisolver=1.1.0
-  - google-auth-httplib2=0.0.2=py36_0
+  - krb5=1.16.3
-  - google-cloud-core=0.24.1=py36_0
+  - libblas=3.8.0
-  - google-cloud-storage=1.1.1=py36_0
+  - libcblas=3.8.0
-  - google-resumable-media=0.0.2=py36_0
+  - libcurl=7.65.3
-  - googleapis-common-protos=1.5.3=py_1
+  - libdap4=3.20.4
-  - graphite2=1.3.12=hfc679d8_1
+  - libedit=3.1.20170329
-  - graphviz=2.38.0=h08bfae6_9
+  - libffi=3.2.1
-  - gst-plugins-base=1.12.5=hde13a9d_0
+  - libgcc-ng=9.1.0
-  - gstreamer=1.12.5=h61a6719_0
+  - libgdal=2.4.2
-  - h5netcdf=0.6.2=py_0
+  - libgfortran-ng=7.3.0
-  - h5py=2.8.0=py36h097b052_4
+  - libiconv=1.15
-  - harfbuzz=1.8.8=h08d66d9_0
+  - libkml=1.3.0
-  - hdf4=4.2.13=h951d187_2
+  - liblapack=3.8.0
-  - hdf5=1.10.3=hc401514_2
+  - libnetcdf=4.6.2
-  - heapdict=1.0.0=py36_0
+  - libopenblas=0.3.7
-  - httplib2=0.11.3=py36_1
+  - libpng=1.6.37
-  - icu=58.2=hfc679d8_0
+  - libpq=11.5
-  - idna=2.7=py36_2
+  - libspatialindex=1.9.3
-  - idna_ssl=1.0.0=0
+  - libspatialite=4.3.0a
-  - ipython=7.2.0=py36h24bf2e0_1000
+  - libssh2=1.8.2
-  - ipython_genutils=0.2.0=py_1
+  - libstdcxx-ng=9.1.0
-  - jedi=0.12.1=py36_0
+  - libtiff=4.0.10
-  - jinja2=2.10=py_1
+  - libuuid=2.32.1
-  - jmespath=0.9.3=py_1
+  - libxcb=1.13
-  - jpeg=9c=h470a237_1
+  - libxml2=2.9.9
-  - json-c=0.12.1=h470a237_1
+  - locket=0.2.0
-  - jsonschema=2.6.0=py36_2
+  - lz4-c=1.8.3
-  - kealib=1.4.10=hb88cf67_0
+  - lzo=2.10
-  - kiwisolver=1.0.1=py36h2d50403_2
+  - markupsafe=1.1.1
-  - krb5=1.14.6=0
+  - matplotlib-base=3.1.1
-  - libdap4=3.19.1=h8fe5423_1
+  - memory_profiler=0.55.0
-  - libffi=3.2.1=hfc679d8_4
+  - mock=3.0.5
-  - libgcc-ng=7.2.0=hdf63c60_3
+  - more-itertools=7.2.0
-  - libgdal=2.3.2=hc73897a_0
+  - msgpack-python=0.6.2
-  - libgfortran=3.0.0=1
+  - munch=2.3.2
-  - libiconv=1.15=h470a237_3
+  - ncurses=6.1
-  - libkml=1.3.0=hccc92b1_8
+  - numexpr=2.7.0
-  - libnetcdf=4.6.1=h9cd6fdc_11
+  - numpy=1.17.3
-  - libpng=1.6.35=ha92aebf_1
+  - olefile=0.46
-  - libpq=9.6.3=0
+  - openjpeg=2.3.1
-  - libprotobuf=3.6.0=hd28b015_0
+  - openssl=1.1.1c
-  - libspatialindex=1.8.5=hfc679d8_3
+  - owslib=0.18.0
-  - libspatialite=4.3.0a=hdfcc80b_23
+  - packaging=19.2
-  - libssh2=1.8.0=h5b517e9_2
+  - pandas=0.25.2
-  - libstdcxx-ng=7.2.0=hdf63c60_3
+  - parso=0.5.1
-  - libtiff=4.0.9=he6b73bb_2
+  - partd=1.0.0
-  - libtool=2.4.6=h470a237_1
+  - patsy=0.5.1
-  - libuuid=2.32.1=h470a237_0
+  - pcre=8.43
-  - libxcb=1.13=h470a237_2
+  - pexpect=4.7.0
-  - libxml2=2.9.8=h422b904_3
+  - pickleshare=0.7.5
-  - locket=0.2.0=py_2
+  - pillow=6.2.1
-  - lzo=2.10=0
+  - pip=19.3.1
-  - markupsafe=1.0=py36h470a237_1
+  - pixman=0.38.0
-  - matplotlib=3.0.2=py36h8a2030e_1
+  - pluggy=0.13.0
-  - matplotlib-base=3.0.2=py36h20b835b_1
+  - poppler=0.67.0
-  - memory_profiler=0.55.0=py_0
+  - poppler-data=0.4.9
-  - mkl_fft=1.0.6=py36_0
+  - postgresql=11.5
-  - mkl_random=1.0.1=py36_0
+  - progressbar2=3.47.0
-  - msgpack-python=0.5.6=py36h2d50403_2
+  - proj4=6.1.1
-  - multidict=4.3.1=py36h470a237_0
+  - prompt_toolkit=2.0.10
-  - munch=2.3.2=py_0
+  - psutil=5.6.3
-  - ncurses=6.1=hfc679d8_1
+  - pthread-stubs=0.4
-  - netcdf4=1.4.2=py36hac939d9_0
+  - ptyprocess=0.6.0
-  - networkx=2.2=py_1
+  - py=1.8.0
-  - nose=1.3.7=py36_2
+  - pycountry=19.8.18
-  - numexpr=2.6.6=py36_0
+  - pycparser=2.19
-  - numpy=1.15.4=py36_blas_openblashb06ca3d_0
+  - pyepsg=0.4.0
-  - openblas=0.3.3=ha44fe06_1
+  - pygments=2.4.2
-  - openjpeg=2.3.0=h0e734dc_3
+  - pykdtree=1.3.1
-  - openssl=1.0.2p=h470a237_1
+  - pyopenssl=19.0.0
-  - packaging=17.1=py_0
+  - pyparsing=2.4.2
-  - pandas=0.23.4=py36hf8a1672_0
+  - pyproj=2.2.2
-  - pango=1.40.14=he752989_2
+  - pyrsistent=0.15.4
-  - paramiko=2.4.1=py36_0
+  - pyshp=2.1.0
-  - parso=0.3.1=py_0
+  - pysocks=1.7.1
-  - partd=0.3.8=py_1
+  - pytables=3.5.2
-  - patsy=0.5.0=py_1
+  - pytest=5.0.1
-  - pcre=8.41=h470a237_2
+  - pytest-runner=5.1
-  - pexpect=4.6.0=py36_0
+  - python=3.7.3
-  - pickleshare=0.7.4=py36_0
+  - python-dateutil=2.8.0
-  - pip=18.1=py36_1000
+  - python-utils=2.3.0
-  - pixman=0.34.0=2
+  - pytz=2019.3
-  - ply=3.11=py_1
+  - pyyaml=5.1.2
-  - poppler=0.67.0=h4d7e492_3
+  - rasterio=1.0.28
-  - poppler-data=0.4.9=0
+  - ratelimiter=1.2.0
-  - postgresql=9.6.3=4
+  - readline=8.0
-  - prettytable=0.7.2=py_2
+  - requests=2.22.0
-  - proj4=4.9.3=h470a237_8
+  - rtree=0.8.3
-  - prompt_toolkit=2.0.7=py_0
+  - scikit-learn=0.21.3
-  - protobuf=3.6.0=py36hfc679d8_0
+  - scipy=1.3.1
-  - psutil=5.4.7=py36h470a237_1
+  - seaborn=0.9.0
-  - psycopg2=2.7.5=py36hdffb7b8_1
+  - setuptools=41.4.0
-  - pthread-stubs=0.4=h470a237_1
+  - shapely=1.6.4
-  - ptyprocess=0.6.0=py36_0
+  - six=1.12.0
-  - pyasn1=0.4.4=py_0
+  - smmap2=2.0.5
-  - pyasn1-modules=0.2.1=py_0
+  - snakemake-minimal=5.7.4
-  - pycountry=18.12.8=py_0
+  - snuggs=1.4.7
-  - pycparser=2.18=py_1
+  - sortedcontainers=2.1.0
-  - pygments=2.2.0=py_1
+  - sqlite=3.30.1
-  - pygraphviz=1.4rc1=py36h470a237_0
+  - statsmodels=0.10.1
-  - pynacl=1.1.2=py36_0
+  - tbb=2018.0.5
-  - pyomo=5.5.1=py36_1000
+  - tblib=1.4.0
-  - pyopenssl=18.0.0=py36_0
+  - tiledb=1.6.2
-  - pyparsing=2.2.0=py_1
+  - tk=8.6.9
-  - pyproj=1.9.5.1=py36h508ed2a_6
+  - toolz=0.10.0
-  - pyqt=5.6.0=py36h8210e8a_7
+  - tornado=6.0.3
-  - pysal=1.14.4.post2=py36_0
+  - traitlets=4.3.3
-  - pysftp=0.2.9=py_1
+  - tzcode=2019a
-  - pyshp=2.0.0=py_0
+  - urllib3=1.25.6
-  - pysocks=1.6.8=py36_2
+  - wcwidth=0.1.7
-  - pytables=3.4.4=py36h2392372_3
+  - wheel=0.33.6
-  - python=3.6.7=h5001a0f_1
+  - wrapt=1.11.2
-  - python-dateutil=2.7.3=py_0
+  - xarray=0.14.0
-  - python-irodsclient=0.7.0=py_0
+  - xerces-c=3.2.2
-  - pytz=2018.5=py_0
+  - xlrd=1.2.0
-  - pyutilib=5.6.3=py36_0
+  - xorg-kbproto=1.0.7
-  - pyyaml=3.13=py36h470a237_1
+  - xorg-libice=1.0.10
-  - qt=5.6.2=hf70d934_9
+  - xorg-libsm=1.2.3
-  - rasterio=1.0.13=py36h54a03ab_0
+  - xorg-libx11=1.6.9
-  - rasterstats=0.13.0=py_0
+  - xorg-libxau=1.0.9
-  - ratelimiter=1.2.0=py36_0
+  - xorg-libxdmcp=1.1.3
-  - readline=7.0=haf1bffa_1
+  - xorg-libxext=1.3.4
-  - requests=2.19.1=py36_1
+  - xorg-libxrender=0.9.10
-  - rsa=3.4.2=py_1
+  - xorg-renderproto=0.11.1
-  - rtree=0.8.3=py36_0
+  - xorg-xextproto=7.3.0
-  - s3transfer=0.1.13=py36_0
+  - xorg-xproto=7.0.31
-  - scikit-learn=0.20.2=py36_blas_openblash00c3548_400
+  - xz=5.2.4
-  - scipy=1.2.0=py36_blas_openblashb06ca3d_200
+  - yaml=0.1.7
-  - seaborn=0.9.0=py_0
+  - zict=1.0.0
-  - setuptools=40.2.0=py36_0
+  - zipp=0.6.0
-  - shapely=1.6.4=py36h164cb2d_1
+  - zlib=1.2.11
-  - simplegeneric=0.8.1=py_1
+  - zstd=1.4.0
-  - simplejson=3.16.0=py36h470a237_1
-  - sip=4.18.1=py36hfc679d8_0
-  - six=1.12.0=py36_1000
-  - smmap2=2.0.5=py_0
-  - snuggs=1.4.1=py_1
-  - sortedcontainers=2.0.4=py_1
-  - sqlalchemy=1.2.11=py36h470a237_0
-  - sqlite=3.26.0=hb1c47c0_0
-  - statsmodels=0.9.0=py36_0
-  - tblib=1.3.2=py_1
-  - tk=8.6.9=ha92aebf_0
-  - toolz=0.9.0=py_0
-  - tornado=5.1=py36h470a237_1
-  - traitlets=4.3.2=py36_0
-  - urllib3=1.23=py36_1
-  - wcwidth=0.1.7=py_1
-  - wheel=0.31.1=py36_1
-  - wrapt=1.10.11=py36_0
-  - xarray=0.11.0=py36_1000
-  - xerces-c=3.2.0=0
-  - xlrd=1.2.0=py_0
-  - xmlrunner=1.7.7=py_0
-  - xorg-kbproto=1.0.7=h470a237_2
-  - xorg-libice=1.0.9=h470a237_4
-  - xorg-libsm=1.2.2=h8c8a85c_6
-  - xorg-libx11=1.6.6=h470a237_0
-  - xorg-libxau=1.0.8=h470a237_6
-  - xorg-libxdmcp=1.1.2=h470a237_7
-  - xorg-libxext=1.3.3=h470a237_4
-  - xorg-libxpm=3.5.12=h470a237_2
-  - xorg-libxrender=0.9.10=h470a237_2
-  - xorg-libxt=1.1.5=h470a237_2
-  - xorg-renderproto=0.11.1=h470a237_2
-  - xorg-xextproto=7.3.0=h470a237_2
-  - xorg-xproto=7.0.31=h470a237_7
-  - xz=5.2.4=h470a237_1
-  - yaml=0.1.7=h470a237_1
-  - yarl=1.2.6=py36h470a237_0
-  - zict=0.1.3=py_0
-  - zlib=1.2.11=h470a237_3
-  - bcrypt=3.1.4=py36h14c3975_0
-  - datrie=0.7.1=py36_0
-  - intel-openmp=2018.0.3=0
-  - libgfortran-ng=7.3.0=hdf63c60_0
-  - libopenblas=0.2.20=h9ac9557_7
-  - mkl=2018.0.3=1
-  - numpy-base=1.14.3=py36h0ea5e3f_1
   - pip:
-    - pypsa>=0.13.2
+    - beautifulsoup4==4.8.1
-    - vresutils>=0.2.5
+    - cdsapi==0.2.3
-    - git+https://github.com/FRESNA/atlite.git#egg=atlite
+    - countrycode==0.2
-    - git+https://github.com/PyPSA/glaes.git#egg=glaes
+    - descartes==1.1.0
-    - git+https://github.com/PyPSA/geokit.git#egg=geokit
+    - entsoe-py==0.2.10
-
+    - geographiclib==1.50
+    - geokit==1.1.2
+    - geopy==1.20.0
+    - glaes==1.1.2
+    - networkx==2.4
+    - nose==1.3.7
+    - ply==3.11
+    - powerplantmatching==0.4.1
+    - pyomo==5.6.6
+    - pypsa==0.14.1
+    - pyutilib==5.7.1
+    - soupsieve==1.9.4
+    - tqdm==4.36.1
+    - vresutils==0.3

environment.yaml

@@ -7,6 +7,7 @@ dependencies:
   - pip
 
   #- pypsa>=0.14  # until pypsa/pypsa#102 closed
+  - atlite
 
   # Dependencies of the workflow itself
   - xlrd
@@ -16,6 +17,7 @@ dependencies:
   - snakemake-minimal
   - memory_profiler
   - yaml
+  - pytables
 
   # Second order dependencies which should really be deps of atlite
   - xarray
@@ -31,7 +33,7 @@ dependencies:
   # GIS dependencies have to come all from conda-forge
   - conda-forge::cartopy
   - conda-forge::fiona
-  - conda-forge::pyproj
+  - conda-forge::pyproj<=2.2.2
   - conda-forge::pyshp
   - conda-forge::geopandas
   - conda-forge::rasterio
@@ -40,8 +42,7 @@ dependencies:
 
   - pip:
     - vresutils>=0.3
-    - git+https://github.com/PyPSA/pypsa.git#egg=pypsa # until pypsa/pypsa#102 closed
+    - git+https://github.com/PyPSA/pypsa.git#egg=pypsa  # until pypsa/pypsa#102 closed
-    - git+https://github.com/FRESNA/atlite.git#egg=atlite
     - git+https://github.com/PyPSA/glaes.git#egg=glaes
     - git+https://github.com/PyPSA/geokit.git#egg=geokit
     - cdsapi