snakefmt to Snakefile

Snakefile

@@ -33,7 +33,10 @@ BENCHMARKS = "benchmarks/" + RDIR
 RESOURCES = "resources/" + RDIR if not run.get("shared_resources") else "resources/"
 RESULTS = "results/" + RDIR
 
-localrules: purge
+
+localrules:
+    purge,
+
 
 wildcard_constraints:
     simpl="[a-zA-Z0-9]*",
@@ -42,6 +45,7 @@ wildcard_constraints:
     opts="[-+a-zA-Z0-9\.]*",
     sector_opts="[-+a-zA-Z0-9\.\s]*",
 
+
 include: "rules/common.smk"
 include: "rules/collect.smk"
 include: "rules/retrieve.smk"
@@ -62,22 +66,25 @@ if config["foresight"] == "myopic":
 
 
 rule purge:
-    message: "Purging generated resources and results. Downloads are kept."
+    message:
+        "Purging generated resources and results. Downloads are kept."
     run:
         rmtree("resources/")
         rmtree("results/")
 
 
 rule dag:
-    message: "Creating DAG of workflow."
+    message:
+        "Creating DAG of workflow."
     output:
         dot=RESOURCES + "dag.dot",
         pdf=RESOURCES + "dag.pdf",
-        png=RESOURCES + "dag.png"
+        png=RESOURCES + "dag.png",
-    conda: "envs/environment.yaml"
+    conda:
+        "envs/environment.yaml"
     shell:
         """
         snakemake --rulegraph all | sed -n "/digraph/,\$p" > {output.dot}
         dot -Tpdf -o {output.pdf} {output.dot}
         dot -Tpng -o {output.png} {output.dot}
-        """
+        """

rules/common.smk

@@ -2,6 +2,7 @@
 #
 # SPDX-License-Identifier: MIT
 
+
 def memory(w):
     factor = 3.0
     for o in w.opts.split("-"):
@@ -37,4 +38,4 @@ def solved_previous_horizon(wildcards):
         + "postnetworks/elec_s{simpl}_{clusters}_l{ll}_{opts}_{sector_opts}_"
         + planning_horizon_p
         + ".nc"
-    )
+    )

rules/postprocess.smk

@@ -24,7 +24,8 @@ rule plot_network:
         mem_mb=10000,
     benchmark:
         (
-            BENCHMARKS + "plot_network/elec_s{simpl}_{clusters}_l{ll}_{opts}_{sector_opts}_{planning_horizons}"
+            BENCHMARKS
+            + "plot_network/elec_s{simpl}_{clusters}_l{ll}_{opts}_{sector_opts}_{planning_horizons}"
         )
     conda:
         "../envs/environment.yaml"
@@ -55,7 +56,7 @@ rule copy_conda_env:
     resources:
         mem_mb=500,
     log:
-        LOGS + "copy_conda_env.log"
+        LOGS + "copy_conda_env.log",
     benchmark:
         BENCHMARKS + "copy_conda_env"
     conda:
@@ -102,7 +103,7 @@ rule make_summary:
     resources:
         mem_mb=10000,
     log:
-        LOGS + "make_summary.log"
+        LOGS + "make_summary.log",
     benchmark:
         BENCHMARKS + "make_summary"
     conda:
@@ -128,7 +129,7 @@ rule plot_summary:
     resources:
         mem_mb=10000,
     log:
-        LOGS + "plot_summary.log"
+        LOGS + "plot_summary.log",
     benchmark:
         BENCHMARKS + "plot_summary"
     conda:

rules/retrieve.smk

@@ -85,7 +85,7 @@ if config["enable"].get("retrieve_natura_raster", True):
         output:
             RESOURCES + "natura.tiff",
         log:
-            LOGS + "retrieve_natura_raster.log"
+            LOGS + "retrieve_natura_raster.log",
         resources:
             mem_mb=5000,
         retries: 2
@@ -168,7 +168,7 @@ rule retrieve_ship_raster:
     output:
         "data/shipdensity_global.zip",
     log:
-        LOGS + "retrieve_ship_raster.log"
+        LOGS + "retrieve_ship_raster.log",
     resources:
         mem_mb=5000,
     retries: 2

rules/solve_myopic.smk

@@ -29,10 +29,12 @@ rule add_existing_baseyear:
     resources:
         mem_mb=2000,
     log:
-        LOGS + "add_existing_baseyear_elec_s{simpl}_{clusters}_l{ll}_{opts}_{sector_opts}_{planning_horizons}.log"
+        LOGS
+        + "add_existing_baseyear_elec_s{simpl}_{clusters}_l{ll}_{opts}_{sector_opts}_{planning_horizons}.log",
     benchmark:
         (
-            BENCHMARKS + "add_existing_baseyear/elec_s{simpl}_{clusters}_l{ll}_{opts}_{sector_opts}_{planning_horizons}"
+            BENCHMARKS
+            + "add_existing_baseyear/elec_s{simpl}_{clusters}_l{ll}_{opts}_{sector_opts}_{planning_horizons}"
         )
     conda:
         "../envs/environment.yaml"
@@ -56,10 +58,12 @@ rule add_brownfield:
     resources:
         mem_mb=10000,
     log:
-        LOGS + "add_brownfield_elec_s{simpl}_{clusters}_l{ll}_{opts}_{sector_opts}_{planning_horizons}.log"
+        LOGS
+        + "add_brownfield_elec_s{simpl}_{clusters}_l{ll}_{opts}_{sector_opts}_{planning_horizons}.log",
     benchmark:
         (
-            BENCHMARKS + "add_brownfield/elec_s{simpl}_{clusters}_l{ll}_{opts}_{sector_opts}_{planning_horizons}"
+            BENCHMARKS
+            + "add_brownfield/elec_s{simpl}_{clusters}_l{ll}_{opts}_{sector_opts}_{planning_horizons}"
         )
     conda:
         "../envs/environment.yaml"
@@ -94,7 +98,8 @@ rule solve_sector_network_myopic:
         mem_mb=config["solving"]["mem"],
     benchmark:
         (
-            BENCHMARKS + "solve_sector_network/elec_s{simpl}_{clusters}_l{ll}_{opts}_{sector_opts}_{planning_horizons}"
+            BENCHMARKS
+            + "solve_sector_network/elec_s{simpl}_{clusters}_l{ll}_{opts}_{sector_opts}_{planning_horizons}"
         )
     conda:
         "../envs/environment.yaml"

rules/solve_overnight.smk

@@ -29,7 +29,8 @@ rule solve_sector_network:
     benchmark:
         (
             RESULTS
-            + BENCHMARKS + "solve_sector_network/elec_s{simpl}_{clusters}_l{ll}_{opts}_{sector_opts}_{planning_horizons}"
+            + BENCHMARKS
+            + "solve_sector_network/elec_s{simpl}_{clusters}_l{ll}_{opts}_{sector_opts}_{planning_horizons}"
         )
     conda:
         "../envs/environment.yaml"