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compatibility with snakemake 8.14 closes #1108

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This commit is contained in:
Fabian Neumann 2024-06-20 14:38:04 +02:00
parent 450f75a989
commit 14b8de8348
2 changed files with 2 additions and 2 deletions
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2
envs/environment.yaml
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@ -20,7 +20,7 @@ dependencies:
- openpyxl!=3.1.1 - openpyxl!=3.1.1
- pycountry - pycountry
- seaborn - seaborn
- snakemake-minimal>=8.11 - snakemake-minimal>=8.14
- memory_profiler - memory_profiler
- yaml - yaml
- pytables - pytables

2
scripts/_helpers.py
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@ -407,12 +407,12 @@ def mock_snakemake(
from snakemake.common import SNAKEFILE_CHOICES from snakemake.common import SNAKEFILE_CHOICES
from snakemake.script import Snakemake from snakemake.script import Snakemake
from snakemake.settings import ( from snakemake.settings import (
ConfigSettings,
DAGSettings, DAGSettings,
ResourceSettings, ResourceSettings,
StorageSettings, StorageSettings,
WorkflowSettings, WorkflowSettings,
) )
from snakemake.settings.types import ConfigSettings
script_dir = Path(__file__).parent.resolve() script_dir = Path(__file__).parent.resolve()
if root_dir is None: if root_dir is None: