pypsa-eur/scripts/helper.py

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Revision complete (#139) * ammonia_production: minor cleaning and move into __main__ (#106) * biomass_potentials: code cleaning and automatic country index inferral (#107) * Revision: build energy totals (#111) * blacken * energy_totals: preliminaries * energy_totals: update build_swiss * energy_totals: update build_eurostat * energy_totals: update build_idees * energy_totals: update build_energy_totals * energy_totals: update build_eea_co2 * energy_totals: update build_eurostat_co2 * energy_totals: update build_co2_totals * energy_totals: update build_transport_data * energy_totals: add tqdm progressbar to idees * energy_totals: adjust __main__ section * energy_totals: handle inputs via Snakefile and config * energy_totals: handle data and emissions year via config * energy_totals: fix reading in eurostat for different years * energy_totals: fix erroneous drop duplicates This caused problems for waste management in HU and SI * energy_totals: make scope selection of CO2 or GHG a config option * Revision: build industrial production per country (#114) * industry-ppc: format * industry-ppc: rewrite for performance * industry-ppc: move reference year to config * industry-ppct: tidy up and format (#115) * remove stale industry demand rules (#116) * industry-epc: rewrite for performance (#117) * Revision: industrial distribution key (#118) * industry-distribution: first tidying * industry-distribution: first tidying * industry-distribution: fix syntax * Revision: industrial energy demand per node today (#119) * industry-epn: minor code cleaning * industry-epn: remove accidental artifact * industry-epn: remove accidental artifact II * industry-ppn: code cleaning (#120) * minor code cleaning (#121) * Revision: industry sector ratios (#122) * sector-ratios: basic reformatting * sector-ratios: add new read_excel function that filters year already * sector-ratios: rename jrc to idees * sector-ratios: rename conv_factor to toe_to_MWh * sector-ratios: modularise into functions * Move overriding of component attributes to function and into data (#123) * move overriding of component attributes to central function and store in separate folder * fix return of helper.override_component_attrs * prepare: fix accidental syntax error * override_component_attrs: bugfix that aligns with pypsa components * Revision: build population layout (#108) * population_layouts: move inside __main__ and blacken * population_layouts: misc code cleaning and multiprocessing * population_layouts: fix fill_values assignment of urban fractions * population_layouts: bugfig for UK-GB naming ambiguity * population_layouts: sort countries alphabetically for better overview * config: change path to atlite cutout * Revision: build clustered population layouts (#112) * population_layouts: move inside __main__ and blacken * population_layouts: misc code cleaning and multiprocessing * population_layouts: fix fill_values assignment of urban fractions * population_layouts: bugfig for UK-GB naming ambiguity * population_layouts: sort countries alphabetically for better overview * cl_pop_layout: blacken * cl_pop_layout: turn GeoDataFrame into GeoSeries + code cleaning * cl_pop_layout: add fraction column which is repeatedly calculated downstream * Revision: build various heating-related time series (#113) * population_layouts: move inside __main__ and blacken * population_layouts: misc code cleaning and multiprocessing * population_layouts: fix fill_values assignment of urban fractions * population_layouts: bugfig for UK-GB naming ambiguity * population_layouts: sort countries alphabetically for better overview * cl_pop_layout: blacken * cl_pop_layout: turn GeoDataFrame into GeoSeries + code cleaning * gitignore: add .vscode * heating_profiles: update to new atlite and move into __main__ * heating_profiles: remove extra cutout * heating_profiles: load regions with .buffer(0) and remove clean_invalid_geometries * heating_profiles: load regions with .buffer(0) before squeeze() * heating_profiles: account for transpose of dataarray * heating_profiles: account for transpose of dataarray in add_exiting_baseyear * Reduce verbosity of Snakefile (2) (#128) * tidy Snakefile light * Snakefile: fix indents * Snakefile: add missing RDIR * tidy config by removing quotes and expanding lists (#109) * bugfix: reorder squeeze() and buffer() * plot/summary: cosmetic changes including: (#131) - matplotlibrc for default style and backend - remove unused config options - option to configure geomap colors - option to configure geomap bounds * solve: align with pypsa-eur using ilopf (#129) * tidy myopic code scripts (#132) * use mock_snakemake from pypsa-eur (#133) * Snakefile: add benchmark files to each rule * Snakefile: only run build_retro_cost if endogenously optimised * Snakefile: remove old {network} wildcard constraints * WIP: Revision: prepare_sector_network (#124) * population_layouts: move inside __main__ and blacken * population_layouts: misc code cleaning and multiprocessing * population_layouts: fix fill_values assignment of urban fractions * population_layouts: bugfig for UK-GB naming ambiguity * population_layouts: sort countries alphabetically for better overview * cl_pop_layout: blacken * cl_pop_layout: turn GeoDataFrame into GeoSeries + code cleaning * move overriding of component attributes to central function and store in separate folder * prepare: sort imports and remove six dependency * prepare: remove add_emission_prices * prepare: remove unused set_line_s_max_pu This is a function from prepare_network * prepare: remove unused set_line_volume_limit This is a PyPSA-Eur function from prepare_network * prepare: tidy add_co2limit * remove six dependency * prepare: tidy code first batch * prepare: extend override_component_attrs to avoid hacky madd * prepare: remove hacky madd() for individual components * prepare: tidy shift function * prepare: nodes and countries from n.buses not pop_layout * prepare: tidy loading of pop_layout * prepare: fix prepare_costs function * prepare: optimise loading of traffic data * prepare: move localizer into generate_periodic profiles * prepare: some formatting of transport data * prepare: eliminate some code duplication * prepare: fix remove_h2_network - only try to remove EU H2 store if it exists - remove readding nodal Stores because they are never removed * prepare: move cost adjustment to own function * prepare: fix a syntax error * prepare: add investment_year to get() assuming global variable * prepare: move co2_totals out of prepare_data() * Snakefile: remove unused prepare_sector_network inputs * prepare: move limit p/s_nom of lines/links into function * prepare: tidy add_co2limit file handling * Snakefile: fix tabs * override_component_attrs: add n/a defaults * README: Add network picture to make scope clear * README: Fix date of preprint (was too optimistic...) * prepare: move some more config options to config.yaml * prepare: runtime bugfixes * fix benchmark path * adjust plot ylims * add unit attribute to bus, correct cement capture efficiency * bugfix: land usage constrained missed inplace operation Co-authored-by: Tom Brown <tom@nworbmot.org> * add release notes * remove old fix_branches() function * deps: make geopy optional, remove unused imports * increase default BarConvTol * get ready for upcoming PyPSA release * re-remove ** bug * amend release notes Co-authored-by: Tom Brown <tom@nworbmot.org>
2021-07-01 18:09:04 +00:00
import os
import pandas as pd
from pathlib import Path
from pypsa.descriptors import Dict
from pypsa.components import components, component_attrs
import logging
logger = logging.getLogger(__name__)
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Revision complete (#139) * ammonia_production: minor cleaning and move into __main__ (#106) * biomass_potentials: code cleaning and automatic country index inferral (#107) * Revision: build energy totals (#111) * blacken * energy_totals: preliminaries * energy_totals: update build_swiss * energy_totals: update build_eurostat * energy_totals: update build_idees * energy_totals: update build_energy_totals * energy_totals: update build_eea_co2 * energy_totals: update build_eurostat_co2 * energy_totals: update build_co2_totals * energy_totals: update build_transport_data * energy_totals: add tqdm progressbar to idees * energy_totals: adjust __main__ section * energy_totals: handle inputs via Snakefile and config * energy_totals: handle data and emissions year via config * energy_totals: fix reading in eurostat for different years * energy_totals: fix erroneous drop duplicates This caused problems for waste management in HU and SI * energy_totals: make scope selection of CO2 or GHG a config option * Revision: build industrial production per country (#114) * industry-ppc: format * industry-ppc: rewrite for performance * industry-ppc: move reference year to config * industry-ppct: tidy up and format (#115) * remove stale industry demand rules (#116) * industry-epc: rewrite for performance (#117) * Revision: industrial distribution key (#118) * industry-distribution: first tidying * industry-distribution: first tidying * industry-distribution: fix syntax * Revision: industrial energy demand per node today (#119) * industry-epn: minor code cleaning * industry-epn: remove accidental artifact * industry-epn: remove accidental artifact II * industry-ppn: code cleaning (#120) * minor code cleaning (#121) * Revision: industry sector ratios (#122) * sector-ratios: basic reformatting * sector-ratios: add new read_excel function that filters year already * sector-ratios: rename jrc to idees * sector-ratios: rename conv_factor to toe_to_MWh * sector-ratios: modularise into functions * Move overriding of component attributes to function and into data (#123) * move overriding of component attributes to central function and store in separate folder * fix return of helper.override_component_attrs * prepare: fix accidental syntax error * override_component_attrs: bugfix that aligns with pypsa components * Revision: build population layout (#108) * population_layouts: move inside __main__ and blacken * population_layouts: misc code cleaning and multiprocessing * population_layouts: fix fill_values assignment of urban fractions * population_layouts: bugfig for UK-GB naming ambiguity * population_layouts: sort countries alphabetically for better overview * config: change path to atlite cutout * Revision: build clustered population layouts (#112) * population_layouts: move inside __main__ and blacken * population_layouts: misc code cleaning and multiprocessing * population_layouts: fix fill_values assignment of urban fractions * population_layouts: bugfig for UK-GB naming ambiguity * population_layouts: sort countries alphabetically for better overview * cl_pop_layout: blacken * cl_pop_layout: turn GeoDataFrame into GeoSeries + code cleaning * cl_pop_layout: add fraction column which is repeatedly calculated downstream * Revision: build various heating-related time series (#113) * population_layouts: move inside __main__ and blacken * population_layouts: misc code cleaning and multiprocessing * population_layouts: fix fill_values assignment of urban fractions * population_layouts: bugfig for UK-GB naming ambiguity * population_layouts: sort countries alphabetically for better overview * cl_pop_layout: blacken * cl_pop_layout: turn GeoDataFrame into GeoSeries + code cleaning * gitignore: add .vscode * heating_profiles: update to new atlite and move into __main__ * heating_profiles: remove extra cutout * heating_profiles: load regions with .buffer(0) and remove clean_invalid_geometries * heating_profiles: load regions with .buffer(0) before squeeze() * heating_profiles: account for transpose of dataarray * heating_profiles: account for transpose of dataarray in add_exiting_baseyear * Reduce verbosity of Snakefile (2) (#128) * tidy Snakefile light * Snakefile: fix indents * Snakefile: add missing RDIR * tidy config by removing quotes and expanding lists (#109) * bugfix: reorder squeeze() and buffer() * plot/summary: cosmetic changes including: (#131) - matplotlibrc for default style and backend - remove unused config options - option to configure geomap colors - option to configure geomap bounds * solve: align with pypsa-eur using ilopf (#129) * tidy myopic code scripts (#132) * use mock_snakemake from pypsa-eur (#133) * Snakefile: add benchmark files to each rule * Snakefile: only run build_retro_cost if endogenously optimised * Snakefile: remove old {network} wildcard constraints * WIP: Revision: prepare_sector_network (#124) * population_layouts: move inside __main__ and blacken * population_layouts: misc code cleaning and multiprocessing * population_layouts: fix fill_values assignment of urban fractions * population_layouts: bugfig for UK-GB naming ambiguity * population_layouts: sort countries alphabetically for better overview * cl_pop_layout: blacken * cl_pop_layout: turn GeoDataFrame into GeoSeries + code cleaning * move overriding of component attributes to central function and store in separate folder * prepare: sort imports and remove six dependency * prepare: remove add_emission_prices * prepare: remove unused set_line_s_max_pu This is a function from prepare_network * prepare: remove unused set_line_volume_limit This is a PyPSA-Eur function from prepare_network * prepare: tidy add_co2limit * remove six dependency * prepare: tidy code first batch * prepare: extend override_component_attrs to avoid hacky madd * prepare: remove hacky madd() for individual components * prepare: tidy shift function * prepare: nodes and countries from n.buses not pop_layout * prepare: tidy loading of pop_layout * prepare: fix prepare_costs function * prepare: optimise loading of traffic data * prepare: move localizer into generate_periodic profiles * prepare: some formatting of transport data * prepare: eliminate some code duplication * prepare: fix remove_h2_network - only try to remove EU H2 store if it exists - remove readding nodal Stores because they are never removed * prepare: move cost adjustment to own function * prepare: fix a syntax error * prepare: add investment_year to get() assuming global variable * prepare: move co2_totals out of prepare_data() * Snakefile: remove unused prepare_sector_network inputs * prepare: move limit p/s_nom of lines/links into function * prepare: tidy add_co2limit file handling * Snakefile: fix tabs * override_component_attrs: add n/a defaults * README: Add network picture to make scope clear * README: Fix date of preprint (was too optimistic...) * prepare: move some more config options to config.yaml * prepare: runtime bugfixes * fix benchmark path * adjust plot ylims * add unit attribute to bus, correct cement capture efficiency * bugfix: land usage constrained missed inplace operation Co-authored-by: Tom Brown <tom@nworbmot.org> * add release notes * remove old fix_branches() function * deps: make geopy optional, remove unused imports * increase default BarConvTol * get ready for upcoming PyPSA release * re-remove ** bug * amend release notes Co-authored-by: Tom Brown <tom@nworbmot.org>
2021-07-01 18:09:04 +00:00
def override_component_attrs(directory):
"""Tell PyPSA that links can have multiple outputs by
overriding the component_attrs. This can be done for
as many buses as you need with format busi for i = 2,3,4,5,....
See https://pypsa.org/doc/components.html#link-with-multiple-outputs-or-inputs
Parameters
----------
directory : string
Folder where component attributes to override are stored
analogous to ``pypsa/component_attrs``, e.g. `links.csv`.
Returns
-------
Dictionary of overriden component attributes.
"""
attrs = Dict({k : v.copy() for k,v in component_attrs.items()})
for component, list_name in components.list_name.items():
fn = f"{directory}/{list_name}.csv"
if os.path.isfile(fn):
overrides = pd.read_csv(fn, index_col=0, na_values="n/a")
attrs[component] = overrides.combine_first(attrs[component])
return attrs
# from pypsa-eur/_helpers.py
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def mock_snakemake(rulename, **wildcards):
"""
This function is expected to be executed from the 'scripts'-directory of '
the snakemake project. It returns a snakemake.script.Snakemake object,
based on the Snakefile.
If a rule has wildcards, you have to specify them in **wildcards.
Parameters
----------
rulename: str
name of the rule for which the snakemake object should be generated
**wildcards:
keyword arguments fixing the wildcards. Only necessary if wildcards are
needed.
"""
import snakemake as sm
import os
from pypsa.descriptors import Dict
from snakemake.script import Snakemake
script_dir = Path(__file__).parent.resolve()
assert Path.cwd().resolve() == script_dir, \
f'mock_snakemake has to be run from the repository scripts directory {script_dir}'
os.chdir(script_dir.parent)
for p in sm.SNAKEFILE_CHOICES:
if os.path.exists(p):
snakefile = p
break
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workflow = sm.Workflow(snakefile, overwrite_configfiles=[])
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workflow.include(snakefile)
workflow.global_resources = {}
rule = workflow.get_rule(rulename)
dag = sm.dag.DAG(workflow, rules=[rule])
wc = Dict(wildcards)
job = sm.jobs.Job(rule, dag, wc)
def make_accessable(*ios):
for io in ios:
for i in range(len(io)):
io[i] = os.path.abspath(io[i])
make_accessable(job.input, job.output, job.log)
snakemake = Snakemake(job.input, job.output, job.params, job.wildcards,
job.threads, job.resources, job.log,
job.dag.workflow.config, job.rule.name, None,)
# create log and output dir if not existent
for path in list(snakemake.log) + list(snakemake.output):
Path(path).parent.mkdir(parents=True, exist_ok=True)
os.chdir(script_dir)
return snakemake
# from pypsa-eur/_helpers.py
def progress_retrieve(url, file):
import urllib
from progressbar import ProgressBar
pbar = ProgressBar(0, 100)
def dlProgress(count, blockSize, totalSize):
pbar.update( int(count * blockSize * 100 / totalSize) )
urllib.request.urlretrieve(url, file, reporthook=dlProgress)