pypsa-eur/scripts/retrieve_cutout.py

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## Copyright 2019 Fabian Hofmann (FIAS)
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"""
.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.3517949.svg
:target: https://doi.org/10.5281/zenodo.3517949
Cutouts are spatiotemporal subsets of the European weather data from the `ECMWF ERA5 <https://software.ecmwf.int/wiki/display/CKB/ERA5+data+documentation>`_ reanalysis dataset and the `CMSAF SARAH-2 <https://wui.cmsaf.eu/safira/action/viewDoiDetails?acronym=SARAH_V002>`_ solar surface radiation dataset for the year 2013 (3.9 GB).
They have been prepared by and are for use with the `atlite <https://github.com/PyPSA/atlite>`_ tool. You can either generate them yourself using the ``build_cutouts`` rule or retrieve them directly from `zenodo <https://doi.org/10.5281/zenodo.3517949>`_ through the rule ``retrieve_cutout`` described here.
.. note::
To download cutouts yourself from the `ECMWF ERA5 <https://software.ecmwf.int/wiki/display/CKB/ERA5+data+documentation>`_ you need to `set up the CDS API <https://cds.climate.copernicus.eu/api-how-to>`_.
The :ref:`tutorial` uses smaller `cutouts <https://zenodo.org/record/3518020/files/pypsa-eur-tutorial-cutouts.tar.xz>`_ than required for the full model (19 MB)
.. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.3518020.svg
:target: https://doi.org/10.5281/zenodo.3518020
**Relevant Settings**
.. code:: yaml
tutorial:
enable:
build_cutout:
.. seealso::
Documentation of the configuration file ``config.yaml`` at
:ref:`toplevel_cf`
**Outputs**
- ``cutouts/{cutout}``: weather data from either the `ERA5 <https://www.ecmwf.int/en/forecasts/datasets/reanalysis-datasets/era5>`_ reanalysis weather dataset or `SARAH-2 <https://wui.cmsaf.eu/safira/action/viewProduktSearch>`_ satellite-based historic weather data.
.. seealso::
For details see :mod:`build_cutout` and read the `atlite documentation <https://atlite.readthedocs.io>`_.
"""
Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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import logging
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logger = logging.getLogger(__name__)
Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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from pathlib import Path
import tarfile
from _helpers import progress_retrieve, configure_logging
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if __name__ == "__main__":
Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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configure_logging(snakemake) # TODO Make logging compatible with progressbar (see PR #102)
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if snakemake.config['tutorial']:
url = "https://zenodo.org/record/3518020/files/pypsa-eur-tutorial-cutouts.tar.xz"
else:
url = "https://zenodo.org/record/3517949/files/pypsa-eur-cutouts.tar.xz"
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Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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# Save location
tarball_fn = Path("./cutouts.tar.xz")
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Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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logger.info(f"Downloading cutouts from '{url}'.")
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progress_retrieve(url, tarball_fn)
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Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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logger.info(f"Extracting cutouts.")
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tarfile.open(tarball_fn).extractall()
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Add logging to logfiles to all snakemake workflow scripts. (#102) * Add logging to logfiles to all snakemake workflow scripts. * Fix missing quotation marks in Snakefile. * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * Apply suggestions from code review Co-Authored-By: Fabian Neumann <fabian.neumann@outlook.de> * doc: fix _ec_ filenames in docs * Allow logging message format to be specified in config.yaml. * Add logging for Snakemake rule 'retrieve_databundle '. * Add limited logging to STDERR only for retrieve_*.py scripts. * Import progressbar module only on demand. * Fix logging to file and enable concurrent printing to STDERR for most scripts. * Add new 'logging_format' option to Travis CI test config.yaml. * Add missing parenthesis (bug fix) and cross-os compatible paths. * Fix typos in messages. * Use correct log files for logging (bug fix). * doc: fix line references * config: logging_format in all configs * doc: add doc for logging_format * environment: update to powerplantmatching 0.4.3 * doc: update line references for tutorial.rst * Change logging configuration scheme for config.yaml. * Add helper function for doing basic logging configuration. * Add logpath for prepare_links_p_nom rule. * Outsource basic logging configuration for all scripts to _helper submodule. * Update documentation for changed config.yaml structure. Instead of 'logging_level' and 'logging_format', now 'logging' with subcategories is used. * _helpers: Change configure_logging signature.
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tarball_fn.unlink()
logger.info(f"Cutouts available in '{Path(tarball_fn.stem).stem}'.")