From c723291ac46d02039a5f992e3b461239254a432a Mon Sep 17 00:00:00 2001 From: Tom Brown Date: Mon, 13 May 2019 18:37:11 +0200 Subject: [PATCH] Save solve logs separately for each run --- Snakefile | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/Snakefile b/Snakefile index fe21b731..da98b373 100644 --- a/Snakefile +++ b/Snakefile @@ -188,13 +188,13 @@ rule prepare_sector_network: rule solve_network: - input: config['results_dir'] + config['run'] + "/prenetworks/{network}_s{simpl}_{clusters}_lv{lv}_{opts}_{sector_opts}.nc" - output: config['results_dir'] + config['run'] + "/postnetworks/{network}_s{simpl}_{clusters}_lv{lv}_{opts}_{sector_opts}.nc" + input: config['results_dir'] + config['run'] + "/prenetworks/{network}_s{simpl}_{clusters}_lv{lv}_{opts}_{sector_opts}.nc" + output: config['results_dir'] + config['run'] + "/postnetworks/{network}_s{simpl}_{clusters}_lv{lv}_{opts}_{sector_opts}.nc" shadow: "shallow" log: - solver="logs/{network}_s{simpl}_{clusters}_lv{lv}_{opts}_{sector_opts}_solver.log", - python="logs/{network}_s{simpl}_{clusters}_lv{lv}_{opts}_{sector_opts}_python.log", - memory="logs/{network}_s{simpl}_{clusters}_lv{lv}_{opts}_{sector_opts}_memory.log" + solver="logs/" + config['run'] + "/{network}_s{simpl}_{clusters}_lv{lv}_{opts}_{sector_opts}_solver.log", + python="logs/" + config['run'] + "/{network}_s{simpl}_{clusters}_lv{lv}_{opts}_{sector_opts}_python.log", + memory="logs/" + config['run'] + "/{network}_s{simpl}_{clusters}_lv{lv}_{opts}_{sector_opts}_memory.log" benchmark: "benchmarks/solve_network/{network}_s{simpl}_{clusters}_lv{lv}_{opts}_{sector_opts}" threads: 4 resources: mem=100000 #memory in MB; 40 GB enough for 45+B+I; 100 GB based on RESI usage for 128