From acfdc36bd7488670fe74ff79603968820164d87d Mon Sep 17 00:00:00 2001
From: Fabian <fab.hof@gmx.de>
Date: Tue, 13 Sep 2022 14:43:53 +0200
Subject: [PATCH] .pre-commit add code spell args

---
 .pre-commit-config.yaml | 121 ++++++++++++++++++++--------------------
 1 file changed, 59 insertions(+), 62 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index a6d643e2..846f0adf 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,86 +1,83 @@
 exclude: "^LICENSES"
 
 repos:
-  - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.3.0
-    hooks:
-      - id: check-merge-conflict
-      - id: end-of-file-fixer
-      - id: fix-encoding-pragma
-      - id: mixed-line-ending
-      - id: trailing-whitespace
-      - id: check-added-large-files
-        args: ["--maxkb=2000"]
+- repo: https://github.com/pre-commit/pre-commit-hooks
+  rev: v4.3.0
+  hooks:
+  - id: check-merge-conflict
+  - id: end-of-file-fixer
+  - id: fix-encoding-pragma
+  - id: mixed-line-ending
+  - id: trailing-whitespace
+  - id: check-added-large-files
+    args: ["--maxkb=2000"]
 
   # Sort package imports alphabetically
-  - repo: https://github.com/PyCQA/isort
-    rev: 5.10.1
-    hooks:
-      - id: isort
-        args: ["--profile", "black", "--filter-files"]
+- repo: https://github.com/PyCQA/isort
+  rev: 5.10.1
+  hooks:
+  - id: isort
+    args: ["--profile", "black", "--filter-files"]
 
   # Convert relative imports to absolute imports
-  - repo: https://github.com/MarcoGorelli/absolufy-imports
-    rev: v0.3.1
-    hooks:
-      - id: absolufy-imports
+- repo: https://github.com/MarcoGorelli/absolufy-imports
+  rev: v0.3.1
+  hooks:
+  - id: absolufy-imports
 
   # Find common spelling mistakes in comments and docstrings
-  - repo: https://github.com/codespell-project/codespell
-    rev: v2.2.1
-    hooks:
-      - id: codespell
-        args: [
-            '--ignore-regex="(\b[A-Z]+\b)"',
-          ] # Ignore capital case words, e.g. country codes
-        types_or: [python, rst, markdown]
-        files: ^(scripts|doc)/
+- repo: https://github.com/codespell-project/codespell
+  rev: v2.2.1
+  hooks:
+  - id: codespell
+    args: ['--ignore-regex="(\b[A-Z]+\b)"', '--ignore-words-list=FOM'] # Ignore capital case words, e.g. country codes
+    types_or: [python, rst, markdown]
+    files: ^(scripts|doc)/
 
   # Make docstrings PEP 257 compliant
-  - repo: https://github.com/myint/docformatter
-    rev: v1.5.0
-    hooks:
-      - id: docformatter
-        args:
-          ["--in-place", "--make-summary-multi-line", "--pre-summary-newline"]
+- repo: https://github.com/myint/docformatter
+  rev: v1.5.0
+  hooks:
+  - id: docformatter
+    args: ["--in-place", "--make-summary-multi-line", "--pre-summary-newline"]
 
-  - repo: https://github.com/keewis/blackdoc
-    rev: v0.3.5
-    hooks:
-      - id: blackdoc
+- repo: https://github.com/keewis/blackdoc
+  rev: v0.3.5
+  hooks:
+  - id: blackdoc
 
   # Formatting with "black" coding style
-  - repo: https://github.com/psf/black
-    rev: 22.8.0
-    hooks:
+- repo: https://github.com/psf/black
+  rev: 22.8.0
+  hooks:
       # Format Python files
-      - id: black
+  - id: black
       # Format Jupyter Python notebooks
-      - id: black-jupyter
+  - id: black-jupyter
 
   # Remove output from Jupyter notebooks
-  - repo: https://github.com/aflc/pre-commit-jupyter
-    rev: v1.2.1
-    hooks:
-      - id: jupyter-notebook-cleanup
-        args: ["--remove-kernel-metadata"]
+- repo: https://github.com/aflc/pre-commit-jupyter
+  rev: v1.2.1
+  hooks:
+  - id: jupyter-notebook-cleanup
+    args: ["--remove-kernel-metadata"]
 
   # Do YAML formatting (before the linter checks it for misses)
-  - repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks
-    rev: v2.4.0
-    hooks:
-      - id: pretty-format-yaml
-        args: [--autofix, --indent, "2", --preserve-quotes]
+- repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks
+  rev: v2.4.0
+  hooks:
+  - id: pretty-format-yaml
+    args: [--autofix, --indent, "2", --preserve-quotes]
 
   # Format Snakemake rule / workflow files
-  - repo: https://github.com/snakemake/snakefmt
-    rev: 0.4.4
-    hooks:
-      - id: snakefmt
+- repo: https://github.com/snakemake/snakefmt
+  rev: 0.4.4
+  hooks:
+  - id: snakefmt
 
   # For cleaning jupyter notebooks
-  -   repo: https://github.com/aflc/pre-commit-jupyter
-      rev: v1.2.1
-      hooks:
-      -   id: jupyter-notebook-cleanup
-          exclude: examples/solve-on-remote.ipynb
\ No newline at end of file
+- repo: https://github.com/aflc/pre-commit-jupyter
+  rev: v1.2.1
+  hooks:
+  - id: jupyter-notebook-cleanup
+    exclude: examples/solve-on-remote.ipynb