diff --git a/Snakefile b/Snakefile index 58cb6677..ca1b72cc 100644 --- a/Snakefile +++ b/Snakefile @@ -56,9 +56,9 @@ localrules: wildcard_constraints: simpl="[a-zA-Z0-9]*", clusters="[0-9]+(m|c)?|all", - ll="(v|c)([0-9\.]+|opt)", - opts="[-+a-zA-Z0-9\.]*", - sector_opts="[-+a-zA-Z0-9\.\s]*", + ll=r"(v|c)([0-9\.]+|opt)", + opts=r"[-+a-zA-Z0-9\.]*", + sector_opts=r"[-+a-zA-Z0-9\.\s]*", include: "rules/common.smk" @@ -127,7 +127,7 @@ rule dag: conda: "envs/environment.yaml" shell: - """ + r""" snakemake --rulegraph all | sed -n "/digraph/,\$p" > {output.dot} dot -Tpdf -o {output.pdf} {output.dot} dot -Tpng -o {output.png} {output.dot}